Mercurial > repos > saket-choudhary > mutationassessor_web
comparison mutationassesor_web/test-data/mutationassessor_output.tsv @ 0:e51722489ddb draft default tip
Uploaded
| author | saket-choudhary |
|---|---|
| date | Tue, 07 Oct 2014 19:40:29 -0400 |
| parents | |
| children |
comparison
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| -1:000000000000 | 0:e51722489ddb |
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| 1 Mutation AA variant Gene MSA PDB Func. Impact FI score Uniprot Refseq MSA height Codon start position Func. region Protein bind.site DNA/RNA bind.site small.mol bind.site | |
| 2 1 EGFR_HUMAN G719S G719S EGFR http://getma.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=712&re=968&var=G719S http://getma.org/pdb.php?prot=EGFR_HUMAN&from=712&to=968&var=G719S high 3.88 EGFR_HUMAN NP_005219 700 chr7:55209201 1 1 0UN IRE FMM ANP CY7 HYZ 03P ITI DKI 685 T95 T74 ZZY M97 6XP 0K0 KRW 0JJ 0K1 P17 112 1N1 JIN STI P5C 585 S19 P16 VX6 P3Y SX7 ACK B90 AMP ZD6 STU 7PY BI9 BII ATP ADP 4ST VG8 YAM P1E 7X4 7X5 7X6 7X8 349 3JZ | |
| 3 2 EGFR_HUMAN G724S G724S EGFR http://getma.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=712&re=968&var=G724S http://getma.org/pdb.php?prot=EGFR_HUMAN&from=712&to=968&var=G724S medium 2.7 EGFR_HUMAN NP_005219 700 chr7:55209216 1 ANP 112 ATP AMP 057 | |
| 4 3 EGFR_HUMAN E734K E734K EGFR http://getma.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=712&re=968&var=E734K http://getma.org/pdb.php?prot=EGFR_HUMAN&from=712&to=968&var=E734K neutral -0.08 EGFR_HUMAN NP_005219 700 chr7:55209924 | |
| 5 4 EGFR_HUMAN L747F L747F EGFR http://getma.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=712&re=968&var=L747F http://getma.org/pdb.php?prot=EGFR_HUMAN&from=712&to=968&var=L747F low 1.9 EGFR_HUMAN NP_005219 700 chr7:55209963 1 | |
| 6 5 EGFR_HUMAN R748P R748P EGFR http://getma.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=712&re=968&var=R748P http://getma.org/pdb.php?prot=EGFR_HUMAN&from=712&to=968&var=R748P low 1.155 EGFR_HUMAN NP_005219 700 chr7:55209966 1 VX6 STU S19 | |
| 7 6 EGFR_HUMAN Q787R Q787R EGFR http://getma.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=712&re=968&var=Q787R http://getma.org/pdb.php?prot=EGFR_HUMAN&from=712&to=968&var=Q787R neutral 0.225 EGFR_HUMAN NP_005219 700 chr7:55216555 | |
| 8 7 EGFR_HUMAN T790M T790M EGFR http://getma.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=712&re=968&var=T790M http://getma.org/pdb.php?prot=EGFR_HUMAN&from=712&to=968&var=T790M low 1.17 EGFR_HUMAN NP_005219 700 chr7:55216564 1 1 AQ4 AEE CY0 DJK IRE FMM ANP CY7 HYZ ITI POX 03P 03Q GW7 DKI 477 685 0JE T95 T74 ZZY PFY M97 6XP 0K0 VGH KRW 0JJ 0K1 PRC STI P17 112 1N1 7MP GIN JIN B91 919 9DP DB8 4ST 627 0JK P5C S19 P16 406 VX6 P3Y NIL SX7 0LI XY3 ACK PP1 X2M B90 AMP ZD6 X2K X2L ACP DBQ STU 057 7PY BII ATP ADP YAM P1E 7X4 7X5 7X6 7X8 349 3JZ 4JZ | |
| 9 8 EGFR_HUMAN L833V L833V EGFR http://getma.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=712&re=968&var=L833V http://getma.org/pdb.php?prot=EGFR_HUMAN&from=712&to=968&var=L833V neutral -1.13 EGFR_HUMAN NP_005219 700 chr7:55226933 1 STI GIN B91 919 406 NIL 0LI | |
| 10 9 EGFR_HUMAN V834L V834L EGFR http://getma.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=712&re=968&var=V834L http://getma.org/pdb.php?prot=EGFR_HUMAN&from=712&to=968&var=V834L low 1.87 EGFR_HUMAN NP_005219 700 chr7:55226936 1 STI GIN 406 0LI XY3 PTR | |
| 11 10 EGFR_HUMAN L858R L858R EGFR http://getma.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=712&re=968&var=L858R http://getma.org/pdb.php?prot=EGFR_HUMAN&from=712&to=968&var=L858R medium 3.32 EGFR_HUMAN NP_005219 700 chr7:55227008 1 FMM CY7 HYZ ITI POX 03P GW7 BI9 ATP VG8 YAM | |
| 12 11 EGFR_HUMAN L861Q L861Q EGFR http://getma.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=712&re=968&var=L861Q http://getma.org/pdb.php?prot=EGFR_HUMAN&from=712&to=968&var=L861Q neutral 0.735 EGFR_HUMAN NP_005219 700 chr7:55227017 1 GIN PTR | |
| 13 12 EGFR_HUMAN G873E G873E EGFR http://getma.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=712&re=968&var=G873E http://getma.org/pdb.php?prot=EGFR_HUMAN&from=712&to=968&var=G873E neutral 0.775 EGFR_HUMAN NP_005219 700 chr7:55227053 1 | |
| 14 13 EGFR_HUMAN R962G R962G EGFR http://getma.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=712&re=968&var=R962G http://getma.org/pdb.php?prot=EGFR_HUMAN&from=712&to=968&var=R962G low 0.805 EGFR_HUMAN NP_005219 700 chr7:55235538 1 |