comparison tool_dependencies.xml @ 0:6ef4ff4524ca draft default tip

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author saket-choudhary
date Tue, 07 Oct 2014 19:35:32 -0400
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1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="numpy" version="1.7.1">
4 <repository changeset_revision="ef12a3a11d5b" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="fastcluster" version="1.1.13">
7 <install version="1.0">
8 <actions>
9 <action type="download_by_url">http://cran.r-project.org/src/contrib/fastcluster_1.1.13.tar.gz</action>
10 <action type="shell_command">cd src/python</action>
11 <action type="set_environment_for_install">
12 <repository changeset_revision="98a7d116c15f" name="package_lapack_3_4" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
13 <package name="lapack" version="3.4.2" />
14 </repository>
15 <repository changeset_revision="ef12a3a11d5b" name="package_numpy_1_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
16 <package name="numpy" version="1.7.1" />
17 </repository>
18 </action>
19
20 <action type="make_directory">$INSTALL_DIR/lib/python</action>
21 <action language="cheetah" type="template_command">
22 export PYTHONPATH=\$PYTHONPATH:$env.INSTALL_DIR/lib/python &amp;&amp;
23
24 export PATH=\$PATH:$env.PATH_NUMPY &amp;&amp;
25 export PYTHONPATH=\$PYTHONPATH:$env.PYTHONPATH_NUMPY:$env.PYTHONPATH_SCIPY:$env.PYTHONPATH_MATPLOTLIB &amp;&amp;
26
27 python setup.py install --install-lib $env.INSTALL_DIR/lib/python
28 </action>
29 <action type="set_environment">
30 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
31 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
32 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
33 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
34 <environment_variable action="set_to" name="PYTHONPATH_FASTCLUSTER_LEARN">$INSTALL_DIR/lib/python</environment_variable>
35 </action>
36 </actions>
37 </install>
38 <readme>
39 Compiling fastcluster requires a gcc, numpy.
40 </readme>
41 </package>
42 </tool_dependency>