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comparison polyphen2_web/test-data/polyphen_output_short.tsv @ 0:09f68bdd1999 draft default tip

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author saket-choudhary
date Tue, 07 Oct 2014 19:21:15 -0400
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-1:000000000000 0:09f68bdd1999
1 #o_acc o_pos o_aa1 o_aa2 rsid acc pos aa1 aa2 prediction pph2_prob pph2_FPR pph2_TPR
2 Q92889 706 I T rs1800069 Q92889 706 I T probably damaging 1 0.00026 0.00018
3 Q92889 875 E G rs1800124 Q92889 875 E G possibly damaging 0.937 0.0566 0.801
4 XRCC1_HUMAN 399 R Q rs25487 P18887 399 R Q probably damaging 0.979 0.0411 0.755
5 NP_005792 59 L P rs3390 P41567 59 L P possibly damaging 0.895 0.0631 0.82
6 rs1799931 ? ? ? rs1799931 P11245 286 G E benign 0.317 0.112 0.903
7 Q7RTX0 191 R H ? Q7RTX0 191 R H probably damaging 0.998 0.0112 0.273 # chr1:1267483|GA|uc010nyk.1+|TAS1R3|NP_689414
8 Q9BRK5 190 D E ? Q9BRK5 190 D E possibly damaging 0.454 0.0996 0.889 # chr1:1158631|AC|uc001adh.3-|SDF4|NP_057260
9 Q9BRK5 190 D E ? Q9BRK5 190 D E possibly damaging 0.454 0.0996 0.889 # chr1:1158631|AT|uc001adh.3-|SDF4|NP_057260
10 Q9BRK5-6 190 D E ? Q9BRK5-6 190 D E probably damaging 0.998 0.0112 0.273 # chr1:1158631|AC|uc001adi.3-|SDF4|NP_057631
11 Q9BRK5-6 190 D E ? Q9BRK5-6 190 D E probably damaging 0.998 0.0112 0.273 # chr1:1158631|AT|uc001adi.3-|SDF4|NP_057631
12 Q9BRK5 190 D E ? Q9BRK5 190 D E possibly damaging 0.454 0.0996 0.889 # chr1:1158631|AC|uc001adj.1-|SDF4|
13 Q9BRK5 190 D E ? Q9BRK5 190 D E possibly damaging 0.454 0.0996 0.889 # chr1:1158631|AT|uc001adj.1-|SDF4|
14 Q9BRK5 190 D E ? Q9BRK5 190 D E possibly damaging 0.454 0.0996 0.889 # chr1:1158631|AC|uc009vjv.2-|SDF4|NP_057260
15 Q9BRK5 190 D E ? Q9BRK5 190 D E possibly damaging 0.454 0.0996 0.889 # chr1:1158631|AT|uc009vjv.2-|SDF4|NP_057260
16 ## Sources:
17 ## Predictions: PolyPhen-2 v2.2.2r398
18 ## Sequences: UniProtKB/UniRef100 Release 2011_12 (14-Dec-2011)
19 ## Structures: PDB/DSSP Snapshot 03-Jan-2012 (78304 Structures)
20 ## Genes: UCSC MultiZ46Way GRCh37/hg19 (08-Oct-2009)