Mercurial > repos > saket-choudhary > polyphen2_web

view polyphen2_web/test-data/polyphen_output_log.tsv @ 0:09f68bdd1999 draft default tip

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author saket-choudhary
date Tue, 07 Oct 2014 19:21:15 -0400
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===========================
Stage 1/7: Validating input
===========================
No errors

===============================
Stage 2/7: Mapping genomic SNPs
===============================
No errors

============================
Stage 3/7: Collecting output
============================
No errors

===============================================
Stage 4/7: Building MSA and annotating proteins
===============================================
(XRCC1_HUMAN:399:R/Q)    WARNING: find_gene: Swapped codons (CAG>CGG) in uc002owt.2 nucleotide sequence at position: 1195
(XRCC1_HUMAN:399:R/Q)    WARNING: Replaced reference AA residue (Q) with (R) in uc002owt.2 protein sequence at position: 399
Total errors/warnings: 2

============================
Stage 5/7: Collecting output
============================
No errors

=====================
Stage 6/7: Predicting
=====================
No errors

=============================
Stage 7/7: Generating reports
=============================
No errors