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Semantic Web Tools for Galaxy

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SPARQL Import tool

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This Galaxy (bioinformatics web portal) toolkit currently just contains a tool that enables to specify an URL to a SPARQL endpoint, and a SPARQL query, and to save the returned data in tabular format, for further processing in Galaxy's tools.

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Installation

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  1. Create a folder "semweb_tools" under [galaxy_root]/tools/ and add these files.
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  2. Add the following section right under the starting <toolbox> tag in [galaxy_root]/tool_conf.xml:
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    <section name="Semantic Web Tools" id="semweb_tools">
+        <tool file="semweb_tools/sparql_import.xml" />
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Change log

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  • 2012-11-16: Now works properly (at least for my simple test case)!
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  • 2012-11-16: Created today, still under heavy development!
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+ Recent Activity + RSS feed for galaxy_semwebtools +

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Owner
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Samuel Lampa
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Access Level
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Public
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Type
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Mercurial
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Language
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Python
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Last Updated
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Created
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Size
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+ 3.9 KB + (download) +
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