comparison Galaxy-Workflow-Workflow_constructed_from_history__TAX4FUN_.ga @ 3:a31d9a7155b3 draft

Workflow readyto use
author sarahinraauzeville
date Tue, 19 Dec 2017 07:30:16 -0500
parents
children
comparison
equal deleted inserted replaced
2:64e94a224fb8 3:a31d9a7155b3
1 {
2 "a_galaxy_workflow": "true",
3 "annotation": "",
4 "format-version": "0.1",
5 "name": "Workflow constructed from history 'TAX4FUN'",
6 "steps": {
7 "0": {
8 "annotation": "",
9 "content_id": null,
10 "id": 0,
11 "input_connections": {},
12 "inputs": [
13 {
14 "description": "",
15 "name": "Input Dataset"
16 }
17 ],
18 "label": null,
19 "name": "Input dataset",
20 "outputs": [],
21 "position": {
22 "left": 200,
23 "top": 311
24 },
25 "tool_errors": null,
26 "tool_id": null,
27 "tool_state": "{\"name\": \"Input Dataset\"}",
28 "tool_version": null,
29 "type": "data_input",
30 "uuid": "44401006-15ba-4ffd-9924-a4f96ffc80c0",
31 "workflow_outputs": []
32 },
33 "1": {
34 "annotation": "",
35 "content_id": "Cut1",
36 "id": 1,
37 "input_connections": {},
38 "inputs": [],
39 "label": null,
40 "name": "Cut",
41 "outputs": [
42 {
43 "name": "out_file1",
44 "type": "tabular"
45 }
46 ],
47 "position": {
48 "left": 771,
49 "top": 285
50 },
51 "post_job_actions": {},
52 "tool_errors": null,
53 "tool_id": "Cut1",
54 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"delimiter\": \"\\\"T\\\"\", \"columnList\": \"\\\"c9\\\"\", \"input\": \"null\", \"chromInfo\": \"\\\"/galaxydata/galaxy-preprod/my_tool-data/shared/ucsc/chrom/?.len\\\"\"}",
55 "tool_version": "1.0.2",
56 "type": "tool",
57 "uuid": "5ed51d04-70d0-43b1-b1f2-83659f2514dc",
58 "workflow_outputs": []
59 },
60 "2": {
61 "annotation": "",
62 "content_id": "FROGS_biom_to_stdBiom",
63 "id": 2,
64 "input_connections": {
65 "input_biom": {
66 "id": 0,
67 "output_name": "output"
68 }
69 },
70 "inputs": [],
71 "label": null,
72 "name": "FROGS BIOM to std BIOM",
73 "outputs": [
74 {
75 "name": "output_biom",
76 "type": "biom1"
77 },
78 {
79 "name": "output_metadata",
80 "type": "tabular"
81 }
82 ],
83 "position": {
84 "left": 371,
85 "top": 280
86 },
87 "post_job_actions": {},
88 "tool_errors": null,
89 "tool_id": "FROGS_biom_to_stdBiom",
90 "tool_state": "{\"__page__\": 0, \"input_biom\": \"null\", \"chromInfo\": \"\\\"/galaxydata/galaxy-preprod/my_tool-data/shared/ucsc/chrom/?.len\\\"\", \"__rerun_remap_job_id__\": null}",
91 "tool_version": "1.1.0",
92 "type": "tool",
93 "uuid": "551ee02f-e9de-4809-a2a2-67f16b98889c",
94 "workflow_outputs": []
95 },
96 "3": {
97 "annotation": "",
98 "content_id": "FROGS_biom_to_tsv",
99 "id": 3,
100 "input_connections": {
101 "biom_file": {
102 "id": 2,
103 "output_name": "output_biom"
104 }
105 },
106 "inputs": [],
107 "label": null,
108 "name": "FROGS BIOM to TSV",
109 "outputs": [
110 {
111 "name": "tsv_file",
112 "type": "tabular"
113 },
114 {
115 "name": "multi_affi_file",
116 "type": "tabular"
117 }
118 ],
119 "position": {
120 "left": 582,
121 "top": 285
122 },
123 "post_job_actions": {},
124 "tool_errors": null,
125 "tool_id": "FROGS_biom_to_tsv",
126 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"sequence_file\": \"null\", \"extract_multi_align\": \"\\\"False\\\"\", \"chromInfo\": \"\\\"/galaxydata/galaxy-preprod/my_tool-data/shared/ucsc/chrom/?.len\\\"\", \"biom_file\": \"null\"}",
127 "tool_version": "2.1.0",
128 "type": "tool",
129 "uuid": "70d4fb8a-0079-4d66-b43b-2f55164333d6",
130 "workflow_outputs": []
131 },
132 "4": {
133 "annotation": "",
134 "content_id": "Cut1",
135 "id": 4,
136 "input_connections": {
137 "input": {
138 "id": 3,
139 "output_name": "tsv_file"
140 }
141 },
142 "inputs": [],
143 "label": null,
144 "name": "Cut",
145 "outputs": [
146 {
147 "name": "out_file1",
148 "type": "tabular"
149 }
150 ],
151 "position": {
152 "left": 775,
153 "top": 386
154 },
155 "post_job_actions": {},
156 "tool_errors": null,
157 "tool_id": "Cut1",
158 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"delimiter\": \"\\\"T\\\"\", \"columnList\": \"\\\"c1\\\"\", \"input\": \"null\", \"chromInfo\": \"\\\"/galaxydata/galaxy-preprod/my_tool-data/shared/ucsc/chrom/?.len\\\"\"}",
159 "tool_version": "1.0.2",
160 "type": "tool",
161 "uuid": "e5c36ea2-97f1-45e7-9015-bfe6687a3e33",
162 "workflow_outputs": []
163 },
164 "5": {
165 "annotation": "",
166 "content_id": "Paste1",
167 "id": 5,
168 "input_connections": {
169 "input1": {
170 "id": 1,
171 "output_name": "out_file1"
172 },
173 "input2": {
174 "id": 4,
175 "output_name": "out_file1"
176 }
177 },
178 "inputs": [],
179 "label": null,
180 "name": "Paste",
181 "outputs": [
182 {
183 "name": "out_file1",
184 "type": "input"
185 }
186 ],
187 "position": {
188 "left": 943,
189 "top": 318
190 },
191 "post_job_actions": {},
192 "tool_errors": null,
193 "tool_id": "Paste1",
194 "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"input1\": \"null\", \"__rerun_remap_job_id__\": null, \"delimiter\": \"\\\"T\\\"\", \"chromInfo\": \"\\\"/galaxydata/galaxy-preprod/my_tool-data/shared/ucsc/chrom/?.len\\\"\"}",
195 "tool_version": "1.0.0",
196 "type": "tool",
197 "uuid": "ac6b2cd5-16b0-4010-a3c4-e89f8aad9289",
198 "workflow_outputs": []
199 },
200 "6": {
201 "annotation": "",
202 "content_id": "sm_Tax4Fun",
203 "id": 6,
204 "input_connections": {
205 "input": {
206 "id": 5,
207 "output_name": "out_file1"
208 }
209 },
210 "inputs": [],
211 "label": null,
212 "name": "Tax4Fun",
213 "outputs": [
214 {
215 "name": "output",
216 "type": "txt"
217 }
218 ],
219 "position": {
220 "left": 1123,
221 "top": 322
222 },
223 "post_job_actions": {},
224 "tool_errors": null,
225 "tool_id": "sm_Tax4Fun",
226 "tool_state": "{\"input\": \"null\", \"__rerun_remap_job_id__\": null, \"chromInfo\": \"\\\"/galaxydata/galaxy-preprod/my_tool-data/shared/ucsc/chrom/?.len\\\"\", \"reference\": \"\\\"/galaxydata/galaxy-preprod/my_tools/sm_Tax4Fun/SILVA123/\\\"\", \"__page__\": 0}",
227 "tool_version": "1.0.0",
228 "type": "tool",
229 "uuid": "65fef27b-a217-4ec0-991d-5e68300b3a96",
230 "workflow_outputs": []
231 }
232 },
233 "uuid": "2fb1110e-3dce-4a71-9516-988a5ff7ca17"
234 }