Mercurial > repos > sarahinraauzeville > tax4fun
view README @ 10:444f1e7fe177 draft
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author | sarahinraauzeville |
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date | Thu, 21 Dec 2017 09:09:09 -0500 |
parents | 7c4e86de7d19 |
children |
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#################################################################### How ton install Tax4Fun wrapper ? #################################################################### 1 - Add Tax4Fun files (xml, perl and R) in tools directory Create a sm_Tax4Fun/ directory in tools/ Get Tax4Fun files in this new directory 2 - Add Tax4Fun wrapper in your Tool Menu Add TAX4FUN wrapper in your tool_conf.xml file : geany ../../my_config/my_tool_conf.xml & in your FROGS section: <tool file="my_tools/sm_Tax4Fun/sm_Tax4Fun.xml" /> 3 - Create a symbolique link for the R script ln -s /path/to/tools/sm_Tax4Fun/sm_Tax4Fun.R /path/to/bin/scripts_R/. and add the path in your galaxy.ini file : [workPath] SCRIPTS_R_path=/galaxydata/galaxy-preprod/my_bin/scripts_R/ 4 - Change pah to SILVA123 in sm_Tax4Fun.xml file <param name="reference" type="select" label="Folder location of the unzipped reference data"> <option value="/Path/to/sm_Tax4Fun/SILVA123/">SILVA123</option> <option value="No">OTHER TODO</option> </param>