# HG changeset patch
# User saskia-hiltemann
# Date 1443689239 14400
# Node ID a3b16fd125c35e7731a9ec44242f8b9e7dd8e1c5
# Parent  4600be69b96fd40decc79d87795f93a4ecf44dd4
added GoNL download link

diff -r 4600be69b96f -r a3b16fd125c3 tools/annovar/annovar.xml
--- a/tools/annovar/annovar.xml	Thu Oct 01 04:24:45 2015 -0400
+++ b/tools/annovar/annovar.xml	Thu Oct 01 04:47:19 2015 -0400
@@ -169,7 +169,7 @@
 
         <param name="exac03" type="boolean" checked="False" truevalue="Y" falsevalue="N" label="Annotate with ExAC 03? (The Exome Aggregation Consortium)" help=" The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a wide variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data set provided on this website spans 60,706 unrelated individuals sequenced as part of various disease-specific and population genetic studies. See http://exac.broadinstitute.org/faq for more information."/> 
 
-        <param name="gonl" type="boolean" checked="False" truevalue="Y" falsevalue="N" label="Annotate with GoNL data? (hg19 only)"/> 
+        <param name="gonl" type="boolean" checked="False" truevalue="Y" falsevalue="N" label="Annotate with GoNL (Genome of the Netherlands) data? (hg19 only)" help="This is a custom made annotation file, not available from the ANNOVAR website. The database file can be obtained from http://bioinf-galaxian.erasmusmc.nl/public/Data/hg19_gonl.txt "/> 
         <param name="spidex" type="boolean" checked="False" truevalue="Y" falsevalue="N" label="Annotate with SPIDEX database? (hg19 only)" help="This dataset provides machine-learning prediction on how genetic variants affect RNA splicing. (Xiong et al, Science 2015)"/>