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view tool_dependencies.xml @ 2:ec5bddcdff47 draft

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author saskia-hiltemann
date Fri, 09 Oct 2015 08:46:59 -0400
parents ebbb18d665fd
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<?xml version="1.0"?>
<tool_dependency>
   <package name="krona-tools" version="2.6"> 
        <install version="1.0">
            <actions>                    
                <action type="download_by_url">https://github.com/marbl/Krona/releases/download/v2.6/KronaTools-2.6.tar</action>
                <action type="shell_command"> ./install.pl --prefix=.</action>
                <action type="shell_command"> ls </action>
                <action type="shell_command"> chmod a+x scripts/* </action>
                <action type="shell_command"> cp -R * $INSTALL_DIR </action>                 
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/scripts</environment_variable>
                </action>
                <action type="shell_command"> cd $INSTALL_DIR/scripts </action>
                <action type="shell_command"> ls </action>
                <action type="shell_command"> cd $INSTALL_DIR/scripts; for filename in *; do ln -s "$filename" "kt${filename%.pl}"; done;    </action>
           </actions>
        </install>
        <readme>
           Downloads and installs KronaTools. 
        </readme>
    </package>      
</tool_dependency>