Mercurial > repos > saskia-hiltemann > testrepo
changeset 7:afb09b6aee95 draft
Uploaded
| author | saskia-hiltemann |
|---|---|
| date | Fri, 30 Oct 2015 06:09:30 -0400 |
| parents | 8a6e2b2776d2 |
| children | c3cd8bf8f3b5 |
| files | test-data/XY_Plot_1_multi_out.bmp test-data/XY_Plot_1_multi_out.jpeg test-data/XY_Plot_1_multi_out.pdf test-data/XY_Plot_1_multi_out.png test-data/XY_Plot_1_multi_out.tiff test-data/out_file5 xy_plot.xml |
| diffstat | 7 files changed, 88 insertions(+), 6 deletions(-) [+] |
line wrap: on
line diff
--- a/xy_plot.xml Thu Oct 29 12:00:22 2015 -0400 +++ b/xy_plot.xml Fri Oct 30 06:09:30 2015 -0400 @@ -1,5 +1,5 @@ -<tool id="XY_Plot_1_multiformat" name="Plotting tool 2" version="1.0.1"> - <description>for multiple series and graph types</description> +<tool id="XY_Plot_1_multiformat" name="Plotting tool" version="1.0.1"> + <description>for multiple series and graph types and multiple output types</description> <requirements> <requirement type="package" version="3.1.2">R</requirement> <requirement type="package" version="2.11.1">fontconfig</requirement> @@ -10,6 +10,13 @@ <param name="main" type="text" value="" label="Plot Title"/> <param name="xlab" type="text" value="" label="Label for x axis"/> <param name="ylab" type="text" value="" label="Label for y axis"/> + <param name="ftype" type="select" label="File Type"> + <option value="pdf">PDF</option> + <option value="png">PNG</option> + <option value="jpeg">JPEG</option> + <option value="bmp">BMP</option> + <option value="tiff">TIFF</option> + </param> <repeat name="series" title="Series"> <param name="input" type="data" format="tabular" label="Dataset"/> <param name="xcol" type="data_column" data_ref="input" label="Column for x axis"/> @@ -79,7 +86,11 @@ yrange = range( y${i}, yrange ) #end for ## Open output PDF file - png( "${out_file1}" , type="cairo") + #if $ftype.value == "pdf" + pdf("outfile.pdf") + #else + "${ftype}"( "outfile.${ftype}" , type="cairo") + #end if ## Dummy plot for axis / labels plot( NULL, type="n", xlim=xrange, ylim=yrange, main="${main}", xlab="${xlab}", ylab="${ylab}" ) ## Plot each series @@ -96,14 +107,43 @@ </configfiles> <outputs> - <data format="png" name="out_file1" /> + <data format="pdf" name="out_file1" from_work_dir="outfile.pdf" > + <filter>(ftype == 'pdf') </filter> + </data> + <data format="png" name="out_file2" from_work_dir="outfile.png"> + <filter>(ftype == 'png') </filter> + </data> + <data format="jpg" name="out_file3" from_work_dir="outfile.jpeg"> + <filter>(ftype == 'jpeg') </filter> + </data> + <data format="bmp" name="out_file4" from_work_dir="outfile.bmp"> + <filter>(ftype == 'bmp') </filter> + </data> + <data format="tiff" name="out_file5" from_work_dir="outfile.tiff"> + <filter>(ftype == 'tiff') </filter> + </data> </outputs> <tests> <test> - <param name="main" value="Example XY Plot"/> + <param name="main" value="Example XY Plot PDF"/> <param name="xlab" value="Column 1"/> <param name="ylab" value="Column 2"/> + <param name="ftype" value="pdf"/> + <param name="input" value="2.tabular" ftype="tabular"/> + <param name="xcol" value="1"/> + <param name="ycol" value="2"/> + <param name="type" value="line"/> + <param name="lty" value="2"/> + <param name="col" value="2"/> + <param name="lwd" value="1.0"/> + <output name="out_file1" file="XY_Plot_1_multi_out.pdf" md5="83f82e036bdd7fcd51f29e3b7a05c19b"/> + </test> + <test> + <param name="main" value="Example XY Plot PNG"/> + <param name="xlab" value="Column 1"/> + <param name="ylab" value="Column 2"/> + <param name="ftype" value="png"/> <param name="input" value="2.tabular" ftype="tabular"/> <param name="xcol" value="1"/> <param name="ycol" value="2"/> @@ -111,7 +151,49 @@ <param name="lty" value="2"/> <param name="col" value="2"/> <param name="lwd" value="1.0"/> - <output name="out_file1" file="XY_Plot_1_out.pdf"/> + <output name="out_file2" file="XY_Plot_1_multi_out.png" md5="777f98fc9a29c3a02ce4da2fa61437c9"/> + </test> + <test> + <param name="main" value="Example XY Plot JPEG"/> + <param name="xlab" value="Column 1"/> + <param name="ylab" value="Column 2"/> + <param name="ftype" value="jpeg"/> + <param name="input" value="2.tabular" ftype="tabular"/> + <param name="xcol" value="1"/> + <param name="ycol" value="2"/> + <param name="type" value="line"/> + <param name="lty" value="2"/> + <param name="col" value="2"/> + <param name="lwd" value="1.0"/> + <output name="out_file3" file="XY_Plot_1_multi_out.jpeg" md5="609f009b8cd92c0662cb39d6e2eb8cc7"/> + </test> + <test> + <param name="main" value="Example XY Plot BMP"/> + <param name="xlab" value="Column 1"/> + <param name="ylab" value="Column 2"/> + <param name="ftype" value="bmp"/> + <param name="input" value="2.tabular" ftype="tabular"/> + <param name="xcol" value="1"/> + <param name="ycol" value="2"/> + <param name="type" value="line"/> + <param name="lty" value="2"/> + <param name="col" value="2"/> + <param name="lwd" value="1.0"/> + <output name="out_file4" file="XY_Plot_1_multi_out.bmp" md5="a036aa3d0bbc0ff58664077cb5c8e04a"/> + </test> + <test> + <param name="main" value="Example XY Plot TIFF"/> + <param name="xlab" value="Column 1"/> + <param name="ylab" value="Column 2"/> + <param name="ftype" value="tiff"/> + <param name="input" value="2.tabular" ftype="tabular"/> + <param name="xcol" value="1"/> + <param name="ycol" value="2"/> + <param name="type" value="line"/> + <param name="lty" value="2"/> + <param name="col" value="2"/> + <param name="lwd" value="1.0"/> + <output name="out_file5" file="XY_Plot_1_multi_out.tiff" md5="e6ba5639144b23480c556e2185bb5d9a"/> </test> </tests> <help>