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comparison readme.rst @ 1:cb4f92e6fd4e draft

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planemo upload for repository https://github.com/bxlab/galaxy_tools/suites/suite_hifive commit ded5555ebf85f4807cbe4f1bf1945a757bdc724d
author sauria
date Wed, 26 Aug 2015 16:53:42 -0400
parents 0a9c76d80e33
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0:0a9c76d80e33 1:cb4f92e6fd4e
10 This toolset includes methods for normalizing data from either HiC or 5C 10 This toolset includes methods for normalizing data from either HiC or 5C
11 experiments at the fragment-end, or fragment level resolution, respectively. 11 experiments at the fragment-end, or fragment level resolution, respectively.
12 Once normalized, data can be used for plotting, binning, or other statistical 12 Once normalized, data can be used for plotting, binning, or other statistical
13 tests within the package very quickly. 13 tests within the package very quickly.
14 14
15 Original documentation can be found `here <http://hifive.docs.taylorlab.org/en/latest/>`_. 15 Original documentation can be found `here <http://bxlab-hifive.readthedocs.org/en/latest/>`_.
16 16
17 Automated Installation 17 Automated Installation
18 ====================== 18 ======================
19 19
20 Galaxy should be able to automatically install the dependencies, i.e. the 20 Galaxy should be able to automatically install the dependencies, i.e. the
26 For those not using Galaxy's automated installation from the Tool Shed, put 26 For those not using Galaxy's automated installation from the Tool Shed, put
27 the XML and Python files in the ``tools/hifive/`` folder and add the 27 the XML and Python files in the ``tools/hifive/`` folder and add the
28 XML files to your ``tool_conf.xml`` as normal. For example, use:: 28 XML files to your ``tool_conf.xml`` as normal. For example, use::
29 29
30 <section name="HiFive" id="hifive_tools"> 30 <section name="HiFive" id="hifive_tools">
31 <tool file="hifive/complete_hic_project.xml" /> 31 <tool file="hifive.xml" />
32 <tool file="hifive/create_hic_fendset.xml" />
33 <tool file="hifive/create_hic_dataset.xml" />
34 <tool file="hifive/create_hic_project.xml" />
35 <tool file="hifive/learn_hic_normalization.xml" />
36 <tool file="hifive/create_hic_heatmap.xml" />
37 <tool file="hifive/get_interval_hic_data.xml" />
38 <tool file="hifive/complete_fivec_project.xml" />
39 <tool file="hifive/create_fivec_fragmentset.xml" />
40 <tool file="hifive/create_fivec_dataset.xml" />
41 <tool file="hifive/create_fivec_project.xml" />
42 <tool file="hifive/learn_fivec_normalization.xml" />
43 <tool file="hifive/create_fivec_heatmap.xml" />
44 <tool file="hifive/get_interval_fivec_data.xml" />
45 </section> 32 </section>
46 33
47 34
48 ================ 35 ================
49 Wrapper Licence 36 Wrapper Licence