Mercurial > repos > sauria > package_hifive_1_2

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planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 031f802858c1b8e03cdc3dac9fc79b96b21db181
author sauria
date Thu, 11 Feb 2016 10:16:46 -0500
parents d35ef187dd58
children
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352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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1 <?xml version="1.0"?>
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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2 <tool_dependency>
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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3 <package name="scipy" version="0.12.0">
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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4 <repository changeset_revision="cfbbe183f8a7" name="package_scipy_0_12" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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5 </package>
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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6 <package name="numpy" version="1.7.1">
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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7 <repository changeset_revision="300877695495" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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8 </package>
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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9 <package name="cython" version="0.20.1">
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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10 <repository changeset_revision="c3a8c46fcb97" name="package_cython_0_20_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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11 </package>
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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12 <package name="h5py" version="2.5.0">
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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13 <repository changeset_revision="cc1a2aae5057" name="package_h5py_2_5_0" owner="sauria" toolshed="https://toolshed.g2.bx.psu.edu" />
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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14 </package>
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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15 <package name="hifive" version="1.2">
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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16 <install version="1.0">
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17 <actions>
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18 <action type="download_by_url">https://pypi.python.org/packages/source/h/hifive/hifive-1.2.2.tar.gz</action>
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19
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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20 <action type="set_environment_for_install">
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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21 <repository changeset_revision="cfbbe183f8a7" name="package_scipy_0_12" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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22 <package name="scipy" version="0.12.0" />
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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23 </repository>
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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24 <repository changeset_revision="300877695495" name="package_numpy_1_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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25 <package name="numpy" version="1.7.1" />
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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26 </repository>
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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27 <repository changeset_revision="c3a8c46fcb97" name="package_cython_0_20_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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28 <package name="cython" version="0.20.1" />
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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29 </repository>
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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30 <repository changeset_revision="cc1a2aae5057" name="package_h5py_2_5_0" owner="sauria" toolshed="https://toolshed.g2.bx.psu.edu">
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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31 <package name="h5py" version="2.5.0" />
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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32 </repository>
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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33 </action>
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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34
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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35 <action type="make_directory">$INSTALL_DIR/lib/python</action>
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36 <action type="make_directory">$INSTALL_DIR/bin</action>
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37 <action type="shell_command">
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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38 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
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39 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
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352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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40 </action>
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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42 <action type="set_environment">
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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43 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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44 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python/site-packages</environment_variable>
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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45 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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46 </action>
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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47 </actions>
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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48 </install>
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49 <readme>
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50 Compiling hifive requires cython.
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51 </readme>
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52 </package>
352e8328d387 planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_2 commit 87b97035740123620fcd87673e5dc7c6edeb8a68
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53 </tool_dependency>