annotate tool_dependencies.xml @ 0:a1a962713395 draft default tip

planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_3 commit 9e84395b3ae2adcc5b5cd9f0a32e59bf2e2f11b0

<?xml version="1.0"?>
<tool_dependency>
    <package name="scipy" version="0.12.0">
        <repository changeset_revision="cfbbe183f8a7" name="package_scipy_0_12" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="numpy" version="1.7.1">
        <repository changeset_revision="300877695495" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="cython" version="0.20.1">
        <repository changeset_revision="bf766623094e" name="package_cython_0_20_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="h5py" version="2.5.0">
        <repository changeset_revision="cc1a2aae5057" name="package_h5py_2_5_0" owner="sauria" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="hifive" version="1.3">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://pypi.python.org/packages/source/h/hifive/hifive-1.3.0.tar.gz</action>
                
                <action type="set_environment_for_install">
                    <repository changeset_revision="cfbbe183f8a7" name="package_scipy_0_12" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="scipy" version="0.12.0" />
                    </repository>
                    <repository changeset_revision="300877695495" name="package_numpy_1_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="numpy" version="1.7.1" />
                    </repository>
                    <repository changeset_revision="bf766623094e" name="package_cython_0_20_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="cython" version="0.20.1" />
                    </repository>
                    <repository changeset_revision="cc1a2aae5057" name="package_h5py_2_5_0" owner="sauria" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="h5py" version="2.5.0" />
                    </repository>
                </action>

                <action type="make_directory">$INSTALL_DIR/lib/python</action>
                <action type="make_directory">$INSTALL_DIR/bin</action>
                <action type="shell_command">
                    export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
                    python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
                </action>

                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python/site-packages</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                    </action>
            </actions>
        </install>
        <readme>
            Compiling hifive requires cython.
        </readme>
    </package>
</tool_dependency>