diff segmentation.xml @ 4:3fcbb8030fcc draft

"planemo upload for repository https://github.com/sblanck/MPAgenomics4Galaxy/tree/master/mpagenomics_wrappers commit 40eda5ea3551e8b3bae32d0a8f405fe90ef22646-dirty"

--- a/segmentation.xml	Tue Jun 16 04:34:09 2020 -0400
+++ b/segmentation.xml	Mon Apr 12 14:47:09 2021 +0000
@@ -1,6 +1,8 @@
-<tool id="segmentation" name="Segmentation and calling" force_history_refresh="True" version="1.1.0">
+<tool id="segmentation" name="Segmentation and calling" version="1.2.0">
   <description>of a previously normalized signal</description>
-  <requirement type="package" version="1.1.2">mpagenomics</requirement>
+   <requirements>
+        <container type="docker">sblanck/mpagenomicsdependencies</container>
+  </requirements>
   <command>
     <![CDATA[ 
         Rscript 
@@ -13,7 +15,7 @@
   			--cellularity '1.0'
   		#end if
   		--input '$input' 
-  		--new_file_path '$__new_file_path__' 
+  		--new_file_path '$output.extra_files_path' 
   		--outputlog '$outputlog' 
   		--output '$output' 
   		--log '$log' 
@@ -63,7 +65,7 @@
     <data format="log" name="log" label="log of segmentation of ${input.name}">
     	<filter>outputlog == "TRUE"</filter>
     </data>
-    <data format="pdf" name="graph" label="graph of segmentation of ${input.name}">
+    <data format="zip" name="graph" label="graph of segmentation of ${input.name}">
     	<filter>outputgraph == "TRUE"</filter>
     </data>
   </outputs>