annotate ngsap-vc/gatk/tool_dependencies.xml @ 3:0d10255b5434 draft default tip

Uploaded

<?xml version="1.0"?>
<tool_dependency>
    <set_environment version="1.0">
        <environment_variable action="set_to" name="GATK_PATH">/mnt/galaxy/tools/GATK/3.4-0</environment_variable>
    </set_environment>
    <!--
    Use GATK_SITE_OPTIONS to set additional parameters that should be inserted in every GATK call.
    The intended use case was to prohibit GATK to collect and send data.
    For example:

    -et "NO_ET" -K "/data/gatk_key_file" ##ET no phone home
    -->
    <set_environment version="1.0">
        <environment_variable action="set_to" name="GATK_SITE_OPTIONS"> </environment_variable>
    </set_environment>
    <package name="package_r_for_gatk_3_4_0" version="3.1.2.1">
        <repository changeset_revision="49c62e9b71ad" name="package_r_for_gatk_3_4_0" owner="avowinkel" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
</tool_dependency>