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|  | 53                 { | 
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|  | 57                 { | 
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|  | 154             "tool_id": "toolshed.g2.bx.psu.edu/repos/bzeitouni/svdetect/svdetect_run_parallel/1.0.0", | 
|  | 155             "tool_state": "{\"__page__\": 0, \"sv_type\": \"\\\"all\\\"\", \"getLinks\": \"{\\\"window_size\\\": \\\"3000\\\", \\\"step_length\\\": \\\"250\\\", \\\"splitmate\\\": \\\"True\\\", \\\"__current_case__\\\": 1, \\\"linking\\\": \\\"linking\\\"}\", \"mates_file\": \"null\", \"__rerun_remap_job_id__\": null, \"getFilteredLinks\": \"{\\\"nb_pairs_threshold\\\": \\\"5\\\", \\\"filtering\\\": \\\"filtering\\\", \\\"chromosomes\\\": \\\"\\\", \\\"file_conversion\\\": {\\\"file_conversion_select\\\": \\\"do_not_convert\\\", \\\"__current_case__\\\": 0}, \\\"splitlink\\\": \\\"False\\\", \\\"filter1\\\": {\\\"strand_filtering\\\": \\\"strand\\\", \\\"final_score_threshold\\\": \\\"1.0\\\", \\\"__current_case__\\\": 1, \\\"filter2\\\": {\\\"nb_pairs_order_threshold\\\": \\\"2\\\", \\\"order_filtering\\\": \\\"order\\\", \\\"__current_case__\\\": 1, \\\"filter3\\\": {\\\"indel_sigma_threshold\\\": \\\"3.0\\\", \\\"dup_sigma_threshold\\\": \\\"3.0\\\", \\\"singleton_sigma_threshold\\\": \\\"4.0\\\", \\\"__current_case__\\\": 1, \\\"insert_size_filtering\\\": \\\"insert\\\"}, \\\"mu_length\\\": \\\"3000\\\", \\\"sigma_length\\\": \\\"250\\\"}}, \\\"__current_case__\\\": 1, \\\"links2SV\\\": \\\"True\\\"}\", \"read2_length\": \"\\\"50\\\"\", \"read1_length\": \"\\\"50\\\"\", \"sample_name\": \"\\\"sample\\\"\", \"mates_orientation\": \"\\\"FR\\\"\", \"cmap_file\": \"null\"}", | 
|  | 156             "tool_version": "1.0.0", | 
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|  | 160         } | 
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|  | 163 } |