comparison ngsap-vc/SVDetect.ga @ 3:0d10255b5434 draft default tip

Uploaded

3:0d10255b5434

{
    "a_galaxy_workflow": "true", 
    "annotation": "SVDetect workflow.", 
    "format-version": "0.1", 
    "name": "SVDetect", 
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            "id": 0, 
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            "name": "Import data", 
            "outputs": [
                {
                    "name": "outbamfile", 
                    "type": "bam"
                }, 
                {
                    "name": "outlenfile", 
                    "type": "len"
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                {
                    "name": "outsvfile", 
                    "type": "sv"
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            "id": 1, 
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            "name": "Import data", 
            "outputs": [
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                    "name": "outbamfile", 
                    "type": "bam"
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                {
                    "name": "outlenfile", 
                    "type": "len"
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                {
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        "2": {
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                    "id": 0, 
                    "output_name": "outbamfile"
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            }, 
            "inputs": [], 
            "label": null, 
            "name": "BAM preprocessing", 
            "outputs": [
                {
                    "name": "abBAM", 
                    "type": "bam"
                }, 
                {
                    "name": "log", 
                    "type": "txt"
                }, 
                {
                    "name": "normBAM", 
                    "type": "bam"
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            "position": {
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            "tool_state": "{\"__page__\": 0, \"isizeMin\": \"\\\"0\\\"\", \"newBam\": \"{\\\"__current_case__\\\": 1, \\\"pairNormal\\\": \\\"no\\\"}\", \"isizeMax\": \"\\\"10000\\\"\", \"inputBam\": \"null\", \"__rerun_remap_job_id__\": null, \"nbrePair\": \"\\\"1000000\\\"\", \"readType\": \"\\\"1\\\"\", \"sample_name\": \"\\\"sample\\\"\", \"pairType\": \"\\\"1\\\"\", \"foldPair\": \"\\\"3.0\\\"\"}", 
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            "type": "tool", 
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        "3": {
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            "id": 3, 
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                "mates_file": {
                    "id": 2, 
                    "output_name": "abBAM"
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            }, 
            "inputs": [], 
            "label": null, 
            "name": "Detect clusters of anomalously mapped pairs", 
            "outputs": [
                {
                    "name": "sv_file", 
                    "type": "sv"
                }, 
                {
                    "name": "circos_file", 
                    "type": "segdup"
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                {
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