diff ngsap-vc/SAMTools.ga @ 3:0d10255b5434 draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ngsap-vc/SAMTools.ga	Thu Oct 03 10:42:15 2019 -0400
@@ -0,0 +1,160 @@
+{
+    "a_galaxy_workflow": "true", 
+    "annotation": "SAMTools workflow", 
+    "format-version": "0.1", 
+    "name": "SAMTools", 
+    "steps": {
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+            "annotation": "", 
+            "id": 0, 
+            "input_connections": {}, 
+            "inputs": [
+                {
+                    "description": "", 
+                    "name": "Input Dataset"
+                }
+            ], 
+            "label": null, 
+            "name": "Input dataset", 
+            "outputs": [], 
+            "position": {
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+                "top": 169
+            }, 
+            "tool_errors": null, 
+            "tool_id": null, 
+            "tool_state": "{\"name\": \"Input Dataset\"}", 
+            "tool_version": null, 
+            "type": "data_input", 
+            "user_outputs": [], 
+            "uuid": "1eec712c-2fe0-43a8-b033-f027a74c6a48"
+        }, 
+        "1": {
+            "annotation": "", 
+            "id": 1, 
+            "input_connections": {}, 
+            "inputs": [
+                {
+                    "description": "", 
+                    "name": "Input Dataset"
+                }
+            ], 
+            "label": null, 
+            "name": "Input dataset", 
+            "outputs": [], 
+            "position": {
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+            "tool_errors": null, 
+            "tool_id": null, 
+            "tool_state": "{\"name\": \"Input Dataset\"}", 
+            "tool_version": null, 
+            "type": "data_input", 
+            "user_outputs": [], 
+            "uuid": "98d5e3bf-4715-48a2-9b2b-29b21179c425"
+        }, 
+        "2": {
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+            "id": 2, 
+            "input_connections": {
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+                    "id": 0, 
+                    "output_name": "output"
+                }
+            }, 
+            "inputs": [], 
+            "label": null, 
+            "name": "Sort", 
+            "outputs": [
+                {
+                    "name": "output1", 
+                    "type": "bam"
+                }
+            ], 
+            "position": {
+                "left": 330, 
+                "top": 222
+            }, 
+            "post_job_actions": {}, 
+            "tool_errors": null, 
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+            "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"null\", \"sort_mode\": \"\\\"\\\"\"}", 
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+            "type": "tool", 
+            "user_outputs": [], 
+            "uuid": "5e9aef3e-c2ad-43d1-b248-7d94d6a974bc"
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+                    "output_name": "output"
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+            }, 
+            "inputs": [], 
+            "label": null, 
+            "name": "MPileup", 
+            "outputs": [
+                {
+                    "name": "output_mpileup", 
+                    "type": "pileup"
+                }, 
+                {
+                    "name": "output_log", 
+                    "type": "txt"
+                }
+            ], 
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+            "user_outputs": [], 
+            "uuid": "84c6d18e-1930-4eef-b58a-46c88a35339e"
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+                    "output_name": "output_mpileup"
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+            }, 
+            "inputs": [], 
+            "label": null, 
+            "name": "Pileup to VCF", 
+            "outputs": [
+                {
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+                    "type": "vcf"
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+                "top": 469.83331298828125
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+            "tool_version": "2.2", 
+            "type": "tool", 
+            "user_outputs": [], 
+            "uuid": "335581bc-838e-431d-8247-1e1580260275"
+        }
+    }, 
+    "uuid": "0c40a63d-b349-49b8-90b0-c927a05253ef"
+}
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