Mercurial > repos > scisjnu123 > ngsap_vc
view ngsap-vc/gatk/generation/gatk.xsldb.xml @ 3:0d10255b5434 draft default tip
Uploaded
author | scisjnu123 |
---|---|
date | Thu, 03 Oct 2019 10:42:15 -0400 |
parents | |
children |
line wrap: on
line source
<?xml version="1.0" encoding="UTF-8"?> <analyses> <analysis> <name>RealignerTargetCreator</name> <input_type>bam</input_type> <tag>rtc</tag> <macro_file>realigner_target_creator.xml</macro_file> </analysis> <analysis> <name>IndelRealigner</name> <input_type>bam</input_type> <tag>ir</tag> <macro_file>indel_realigner.xml</macro_file> </analysis> <analysis> <name>BaseRecalibrator</name> <input_type>bam</input_type> <tag>br</tag> <macro_file>base_recalibrator.xml</macro_file> </analysis> <analysis> <name>AnalyzeCovariates</name> <input_type>bam</input_type> <tag>ac</tag> <macro_file>analyze_covariates.xml</macro_file> </analysis> <analysis> <name>PrintReads</name> <input_type>bam</input_type> <tag>pr</tag> <macro_file>print_reads.xml</macro_file> </analysis> <analysis> <name>HaplotypeCaller</name> <input_type>bam</input_type> <tag>hc</tag> <macro_file>haplotype_caller.xml</macro_file> </analysis> <analysis> <name>GenotypeGVCFs</name> <input_type>gvcf</input_type> <tag>gg</tag> <macro_file>genotype_gvcfs.xml</macro_file> </analysis> <analysis> <name>CombineGVCFs</name> <input_type>gvcf</input_type> <tag>cg</tag> <macro_file>combine_gvcfs.xml</macro_file> </analysis> <analysis> <name>CombineVariants</name> <input_type>vcf</input_type> <tag>cv</tag> <macro_file>combine_variants.xml</macro_file> </analysis> </analyses>