Mercurial > repos > scisjnu123 > test
comparison picard/test-data/picard_CollectInsertSizeMetrics_test1.tab @ 9:e1ad03534fb2 draft
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| author | scisjnu123 |
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| date | Fri, 13 Sep 2019 02:11:51 -0400 |
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| 8:17755a470e9a | 9:e1ad03534fb2 |
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| 1 ## htsjdk.samtools.metrics.StringHeader | |
| 2 # picard.analysis.CollectInsertSizeMetrics HISTOGRAM_FILE=/Users/anton/galaxy-central/database/files/000/dataset_699.dat DEVIATIONS=10.0 HISTOGRAM_WIDTH=500 MINIMUM_PCT=0.05 METRIC_ACCUMULATION_LEVEL=[ALL_READS] INPUT=/Users/anton/galaxy-central/database/files/000/dataset_616.dat OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_698.dat REFERENCE_SEQUENCE=/Users/anton/temp/mt.fa ASSUME_SORTED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT STOP_AFTER=0 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false | |
| 3 ## htsjdk.samtools.metrics.StringHeader | |
| 4 # Started on: Sat Oct 04 10:14:44 EDT 2014 | |
| 5 | |
| 6 ## METRICS CLASS picard.analysis.InsertSizeMetrics | |
| 7 MEDIAN_INSERT_SIZE MEDIAN_ABSOLUTE_DEVIATION MIN_INSERT_SIZE MAX_INSERT_SIZE MEAN_INSERT_SIZE STANDARD_DEVIATION READ_PAIRS PAIR_ORIENTATION WIDTH_OF_10_PERCENT WIDTH_OF_20_PERCENT WIDTH_OF_30_PERCENT WIDTH_OF_40_PERCENT WIDTH_OF_50_PERCENT WIDTH_OF_60_PERCENT WIDTH_OF_70_PERCENT WIDTH_OF_80_PERCENT WIDTH_OF_90_PERCENT WIDTH_OF_99_PERCENT SAMPLE LIBRARY READ_GROUP | |
| 8 200 28 112 251 193.969697 36.171207 99 FR 7 15 33 43 57 73 83 99 125 177 | |
| 9 | |
| 10 ## HISTOGRAM java.lang.Integer | |
| 11 insert_size All_Reads.fr_count | |
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