comparison picard/test-data/picard_CollectWgsMetrics_test1.tab @ 9:e1ad03534fb2 draft

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## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectWgsMetrics INPUT=/Users/anton/galaxy-central/database/files/000/dataset_773.dat OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_802.dat REFERENCE_SEQUENCE=localref.fa MINIMUM_MAPPING_QUALITY=20 MINIMUM_BASE_QUALITY=20 COVERAGE_CAP=250 VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT    STOP_AFTER=-1 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Tue Oct 07 15:46:29 EDT 2014

## METRICS CLASS	picard.analysis.CollectWgsMetrics$WgsMetrics
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X
16568	2.915983	3.836089	2	2	0	0	0	0	0.008069	0	0.008069	0.240464	0.055831	0.02541	0.011045	0	0	0	0	0	0	0	0	0

## HISTOGRAM	java.lang.Integer
coverage	count
0	5225
1	3010
2	1806
3	1333
4	1210
5	1247
6	672
7	468
8	361
9	311
10	210
11	95
12	78
13	52
14	69
15	64
16	29
17	31
18	53
19	61
20	65
21	74
22	32
23	12
24	0
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