view Galaxy-Workflow-SAMTools.ga @ 7:ab331b4507fd draft

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author scisjnu123
date Thu, 12 Sep 2019 12:39:24 -0400
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{
    "a_galaxy_workflow": "true", 
    "annotation": "This workflow uses SAMTools to call SNPs and INDELs.", 
    "format-version": "0.1", 
    "name": "SAMTools", 
    "steps": {
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            "inputs": [
                {
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                    "name": ".bam file"
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            }, 
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                {
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                    "name": "Reference genome."
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            ], 
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            "name": "Input dataset", 
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            "tool_errors": null, 
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                    "output_name": "output"
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            }, 
            "inputs": [], 
            "label": null, 
            "name": "SortSam", 
            "outputs": [
                {
                    "name": "outFile", 
                    "type": "bam"
                }
            ], 
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                "left": 436.5, 
                "top": 121
            }, 
            "post_job_actions": {}, 
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                    "output_name": "output"
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            }, 
            "inputs": [], 
            "label": null, 
            "name": "MPileup", 
            "outputs": [
                {
                    "name": "output_mpileup", 
                    "type": "pileup"
                }, 
                {
                    "name": "output_log", 
                    "type": "txt"
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}