Mercurial > repos > scottx611x > data_manager_fetch_gene_annotation
comparison data_manager_gene_annotation/data_manager/data_manager.py @ 41:2dbaaa6e8344 draft
planemo upload
author | scottx611x |
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date | Fri, 08 Jul 2016 11:47:55 -0400 |
parents | 87a921902f5e |
children | bf05cda04e1f |
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40:87a921902f5e | 41:2dbaaa6e8344 |
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56 | 56 |
57 # Update Data Manager JSON and write to file | 57 # Update Data Manager JSON and write to file |
58 data_manager_entry = { | 58 data_manager_entry = { |
59 'data_tables': { | 59 'data_tables': { |
60 'gene_annotation': { | 60 'gene_annotation': { |
61 'value': str(args.name), | 61 'value': gene_annotation_file_name, |
62 'dbkey': str(args.name), | 62 'dbkey': gene_annotation_file_name.split(".")[0], |
63 'name': gene_annotation_file_name, | 63 'name': str(args.name), |
64 'path': os.path.join(work_dir, gene_annotation_file_name) | 64 'path': os.path.join(work_dir, gene_annotation_file_name) |
65 } | 65 } |
66 } | 66 } |
67 } | 67 } |
68 | 68 |