Mercurial > repos > shellac > guppy_basecaller
annotate env/lib/python3.7/site-packages/cwltool/tests/portable.cwl @ 3:758bc20232e8 draft
"planemo upload commit 2a0fe2cc28b09e101d37293e53e82f61762262ec"
| author | shellac |
|---|---|
| date | Thu, 14 May 2020 16:20:52 -0400 |
| parents | 26e78fe6e8c4 |
| children |
| rev | line source |
|---|---|
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26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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1 #!/usr/bin/env cwl-runner |
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26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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2 cwlVersion: v1.0 |
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26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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3 class: CommandLineTool |
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26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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4 |
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26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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5 requirements: |
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26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
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6 DockerRequirement: |
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26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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7 dockerPull: debian |
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26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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8 dockerOutputDirectory: /var/spool/cwl |
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26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
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9 InitialWorkDirRequirement: |
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26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
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10 listing: |
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26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
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11 - class: File |
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26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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12 basename: hi.txt |
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26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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13 contents: Hello, World! |
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26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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14 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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15 inputs: [] |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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16 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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17 baseCommand: |
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26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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18 - cat |
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26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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19 - /var/spool/cwl/hi.txt |
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26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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20 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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21 stdout: result.txt |
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22 |
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23 outputs: |
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26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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24 result: stdout |
