Mercurial > repos > shellac > guppy_basecaller
annotate env/lib/python3.7/site-packages/galaxy/tool_util/fetcher.py @ 3:758bc20232e8 draft
"planemo upload commit 2a0fe2cc28b09e101d37293e53e82f61762262ec"
| author | shellac |
|---|---|
| date | Thu, 14 May 2020 16:20:52 -0400 |
| parents | 26e78fe6e8c4 |
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| rev | line source |
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26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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1 from galaxy.util import plugin_config |
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2 |
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26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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3 |
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26e78fe6e8c4
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4 class ToolLocationFetcher(object): |
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5 |
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6 def __init__(self): |
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26e78fe6e8c4
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7 self.resolver_classes = self.__resolvers_dict() |
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26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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8 |
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26e78fe6e8c4
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9 def __resolvers_dict(self): |
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26e78fe6e8c4
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10 import galaxy.tool_util.locations |
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26e78fe6e8c4
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11 return plugin_config.plugins_dict(galaxy.tool_util.locations, 'scheme') |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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12 |
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13 def to_tool_path(self, path_or_uri_like, **kwds): |
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26e78fe6e8c4
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14 if "://" not in path_or_uri_like: |
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26e78fe6e8c4
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15 path = path_or_uri_like |
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26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
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16 else: |
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26e78fe6e8c4
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17 uri_like = path_or_uri_like |
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26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
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18 if ":" not in path_or_uri_like: |
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26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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19 raise Exception("Invalid URI passed to get_tool_source") |
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26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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20 scheme, rest = uri_like.split(":", 2) |
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26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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21 if scheme not in self.resolver_classes: |
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26e78fe6e8c4
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22 raise Exception("Unknown tool scheme [%s] for URI [%s]" % (scheme, uri_like)) |
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26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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23 path = self.resolver_classes[scheme]().get_tool_source_path(uri_like) |
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26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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24 |
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25 return path |
