comparison env/lib/python3.7/site-packages/bioblend/galaxy/tools/inputs.py @ 0:26e78fe6e8c4 draft

"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

0:26e78fe6e8c4

import six


class InputsBuilder(object):
    """
    """

    def __init__(self):
        self._input_dict = {}

    def set(self, name, input):
        self._input_dict[name] = input
        return self

    def set_param(self, name, value):
        return self.set(name, param(value=value))

    def set_dataset_param(self, name, value, src="hda"):
        return self.set(name, dataset(value, src=src))

    def to_dict(self):
        values = {}
        for key, value in self.flat_iter():
            if hasattr(value, "value"):
                value = value.value
            values[key] = value
        return values

    def flat_iter(self, prefix=None):
        for key, value in six.iteritems(self._input_dict):
            effective_key = key if prefix is None else "%s|%s" % (prefix, key)
            if hasattr(value, "flat_iter"):
                for flattened_key, flattened_value in value.flat_iter(effective_key):
                    yield flattened_key, flattened_value
            else:
                yield effective_key, value


class RepeatBuilder(object):

    def __init__(self):
        self._instances = []

    def instance(self, inputs):
        self._instances.append(inputs)
        return self

    def flat_iter(self, prefix=None):
        for index, instance in enumerate(self._instances):
            index_prefix = "%s_%d" % (prefix, index)
            for key, value in instance.flat_iter(index_prefix):
                yield key, value


class Param(object):

    def __init__(self, value):
        self.value = value


class DatasetParam(Param):

    def __init__(self, value, src="hda"):
        if not isinstance(value, dict):
            value = dict(src=src, id=value)
        super(DatasetParam, self).__init__(value)


inputs = InputsBuilder
repeat = RepeatBuilder
conditional = InputsBuilder
param = Param
dataset = DatasetParam

__all__ = ("inputs", "repeat", "conditional", "param")