Mercurial > repos > shellac > guppy_basecaller
comparison env/lib/python3.7/site-packages/cwltool/tests/seqtk_seq.cwl @ 0:26e78fe6e8c4 draft
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
| author | shellac |
|---|---|
| date | Sat, 02 May 2020 07:14:21 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:26e78fe6e8c4 |
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| 1 #!/usr/bin/env cwl-runner | |
| 2 cwlVersion: v1.0 | |
| 3 class: CommandLineTool | |
| 4 id: "seqtk_seq" | |
| 5 doc: "Convert to FASTA (seqtk)" | |
| 6 inputs: | |
| 7 - id: input1 | |
| 8 type: File | |
| 9 inputBinding: | |
| 10 position: 1 | |
| 11 prefix: "-a" | |
| 12 outputs: | |
| 13 - id: output1 | |
| 14 type: File | |
| 15 outputBinding: | |
| 16 glob: out | |
| 17 baseCommand: ["seqtk", "seq"] | |
| 18 arguments: [] | |
| 19 stdout: out | |
| 20 hints: | |
| 21 SoftwareRequirement: | |
| 22 packages: | |
| 23 - package: seqtk | |
| 24 version: | |
| 25 - r93 |