comparison env/lib/python3.7/site-packages/cwltool/tests/test_docker.py @ 0:26e78fe6e8c4 draft

"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

0:26e78fe6e8c4

import pytest

from distutils import spawn

from cwltool.docker import DockerCommandLineJob
from cwltool.main import main

from .util import get_data, get_main_output, needs_docker, needs_singularity

@needs_docker
def test_docker_workflow(tmpdir):
    result_code, _, stderr = get_main_output(
        ['--default-container', 'debian', '--outdir', str(tmpdir),
         get_data("tests/wf/hello-workflow.cwl"), "--usermessage", "hello"])
    assert "completed success" in stderr
    assert result_code == 0

def test_docker_iwdr():
    result_code = main(
        ['--default-container', 'debian',
         get_data("tests/wf/iwdr-entry.cwl"), "--message", "hello"])
    docker_installed = bool(spawn.find_executable('docker'))
    if docker_installed:
        assert result_code == 0
    else:
        assert result_code != 0

@needs_docker
def test_docker_incorrect_image_pull():
    result_code = main(
        ['--default-container', 'non-existant-weird-image',
         get_data("tests/wf/hello-workflow.cwl"), "--usermessage", "hello"])
    assert result_code != 0

@needs_docker
def test_docker_file_mount():
    # test for bug in
    # ContainerCommandLineJob.create_file_and_add_volume()
    #
    # the bug was that it would use the file literal contents as the
    # temporary file name, which can easily result in a file name that
    # is too long or otherwise invalid.  This test case uses ".."
    result_code = main(
        [get_data("tests/wf/literalfile.cwl"), get_data("tests/wf/literalfile-job.yml")])
    assert result_code == 0