comparison env/lib/python3.7/site-packages/planemo/engine/toil.py @ 0:26e78fe6e8c4 draft

"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

0:26e78fe6e8c4

"""Module contianing the :class:`ToilEngine` implementation of :class:`Engine`."""

from planemo import cwl
from planemo.runnable import RunnableType
from .interface import BaseEngine


class ToilEngine(BaseEngine):
    """An :class:`Engine` implementation backed by Toil.

    More information on toil can be found at https://github.com/BD2KGenomics/toil.
    """

    handled_runnable_types = [RunnableType.cwl_tool, RunnableType.cwl_workflow]

    def _run(self, runnable, job_path):
        """Run CWL job using Toil."""
        path = runnable.path
        return cwl.run_toil(self._ctx, path, job_path, **self._kwds)


__all__ = (
    "ToilEngine",
)