Mercurial > repos > shellac > guppy_basecaller
comparison env/lib/python3.7/site-packages/prov/__init__.py @ 0:26e78fe6e8c4 draft
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
| author | shellac |
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| date | Sat, 02 May 2020 07:14:21 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:26e78fe6e8c4 |
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| 1 from __future__ import (absolute_import, division, print_function, | |
| 2 unicode_literals) | |
| 3 | |
| 4 __author__ = 'Trung Dong Huynh' | |
| 5 __email__ = 'trungdong@donggiang.com' | |
| 6 __version__ = '1.5.1' | |
| 7 | |
| 8 __all__ = ["Error", "model", "read"] | |
| 9 | |
| 10 | |
| 11 class Error(Exception): | |
| 12 """Base class for all errors in this package.""" | |
| 13 pass | |
| 14 | |
| 15 | |
| 16 def read(source, format=None): | |
| 17 """ | |
| 18 Convenience function returning a ProvDocument instance. | |
| 19 | |
| 20 It does a lazy format detection by simply using try/except for all known | |
| 21 formats. The deserializers should fail fairly early when data of the | |
| 22 wrong type is passed to them thus the try/except is likely cheap. One | |
| 23 could of course also do some more advanced format auto-detection but I am | |
| 24 not sure that is necessary. | |
| 25 | |
| 26 The downside is that no proper error messages will be produced, use the | |
| 27 format parameter to get the actual traceback. | |
| 28 """ | |
| 29 # Lazy imports to not globber the namespace. | |
| 30 from prov.model import ProvDocument | |
| 31 | |
| 32 from prov.serializers import Registry | |
| 33 Registry.load_serializers() | |
| 34 serializers = Registry.serializers.keys() | |
| 35 | |
| 36 if format: | |
| 37 return ProvDocument.deserialize(source=source, format=format.lower()) | |
| 38 | |
| 39 for format in serializers: | |
| 40 try: | |
| 41 return ProvDocument.deserialize(source=source, format=format) | |
| 42 except: | |
| 43 pass | |
| 44 else: | |
| 45 raise TypeError("Could not read from the source. To get a proper " | |
| 46 "error message, specify the format with the 'format' " | |
| 47 "parameter.") |
