Mercurial > repos > shellac > guppy_basecaller

comparison env/lib/python3.7/site-packages/cwltool/tests/seqtk_seq.cwl @ 5:9b1c78e6ba9c draft default tip

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"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"
author shellac
date Mon, 01 Jun 2020 08:59:25 -0400
parents 79f47841a781
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4:79f47841a781 5:9b1c78e6ba9c
1 #!/usr/bin/env cwl-runner
2 cwlVersion: v1.0
3 class: CommandLineTool
4 id: "seqtk_seq"
5 doc: "Convert to FASTA (seqtk)"
6 inputs:
7 - id: input1
8 type: File
9 inputBinding:
10 position: 1
11 prefix: "-a"
12 outputs:
13 - id: output1
14 type: File
15 outputBinding:
16 glob: out
17 baseCommand: ["seqtk", "seq"]
18 arguments: []
19 stdout: out
20 hints:
21 SoftwareRequirement:
22 packages:
23 - package: seqtk
24 version:
25 - r93