diff env/lib/python3.7/site-packages/planemo/linters/xsd.py @ 0:26e78fe6e8c4 draft

"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/env/lib/python3.7/site-packages/planemo/linters/xsd.py	Sat May 02 07:14:21 2020 -0400
@@ -0,0 +1,28 @@
+"""Tool linting module that lints Galaxy tool against experimental XSD."""
+import copy
+import os
+import tempfile
+
+import galaxy.tool_util
+
+import planemo.lint
+
+TOOL_XSD = os.path.join(os.path.dirname(galaxy.tool_util.__file__), 'xsd', "galaxy.xsd")
+
+
+def lint_tool_xsd(tool_xml, lint_ctx):
+    """Write a temp file out and lint it."""
+    with tempfile.NamedTemporaryFile() as tf:
+        _clean_root(tool_xml).write(tf.name)
+        planemo.lint.lint_xsd(lint_ctx, TOOL_XSD, tf.name)
+
+
+def _clean_root(tool_xml):
+    """XSD assumes macros have been expanded, so remove them."""
+    clean_tool_xml = copy.deepcopy(tool_xml)
+    to_remove = []
+    for macros_el in clean_tool_xml.getroot().findall("macros"):
+        to_remove.append(macros_el)
+    for macros_el in to_remove:
+        clean_tool_xml.getroot().remove(macros_el)
+    return clean_tool_xml