diff env/lib/python3.7/site-packages/bioblend/_tests/TestGalaxyDatasetCollections.py @ 5:9b1c78e6ba9c draft default tip

"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"

--- a/env/lib/python3.7/site-packages/bioblend/_tests/TestGalaxyDatasetCollections.py	Thu May 14 16:47:39 2020 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,135 +0,0 @@
-from bioblend.galaxy import dataset_collections as collections
-from . import GalaxyTestBase
-
-
-class TestGalaxyDatasetCollections(GalaxyTestBase.GalaxyTestBase):
-
-    def test_create_list_in_history(self):
-        history_id = self.gi.histories.create_history(name="TestDSListCreate")["id"]
-        dataset1_id = self._test_dataset(history_id)
-        dataset2_id = self._test_dataset(history_id)
-        dataset3_id = self._test_dataset(history_id)
-        collection_response = self.gi.histories.create_dataset_collection(
-            history_id=history_id,
-            collection_description=collections.CollectionDescription(
-                name="MyDatasetList",
-                elements=[
-                    collections.HistoryDatasetElement(name="sample1", id=dataset1_id),
-                    collections.HistoryDatasetElement(name="sample2", id=dataset2_id),
-                    collections.HistoryDatasetElement(name="sample3", id=dataset3_id),
-                ]
-            )
-        )
-        self.assertEqual(collection_response["name"], "MyDatasetList")
-        self.assertEqual(collection_response["collection_type"], "list")
-        elements = collection_response["elements"]
-        self.assertEqual(len(elements), 3)
-        self.assertEqual(elements[0]["element_index"], 0)
-        self.assertEqual(elements[0]["object"]["id"], dataset1_id)
-        self.assertEqual(elements[1]["object"]["id"], dataset2_id)
-        self.assertEqual(elements[2]["object"]["id"], dataset3_id)
-        self.assertEqual(elements[2]["element_identifier"], "sample3")
-
-    def test_create_list_of_paired_datasets_in_history(self):
-        history_id = self.gi.histories.create_history(name="TestDSListCreate")["id"]
-        dataset1_id = self._test_dataset(history_id)
-        dataset2_id = self._test_dataset(history_id)
-        dataset3_id = self._test_dataset(history_id)
-        dataset4_id = self._test_dataset(history_id)
-        collection_response = self.gi.histories.create_dataset_collection(
-            history_id=history_id,
-            collection_description=collections.CollectionDescription(
-                name="MyListOfPairedDatasets",
-                type="list:paired",
-                elements=[
-                    collections.CollectionElement(
-                        name="sample1",
-                        type="paired",
-                        elements=[
-                            collections.HistoryDatasetElement(name="forward", id=dataset1_id),
-                            collections.HistoryDatasetElement(name="reverse", id=dataset2_id),
-                        ]
-                    ),
-                    collections.CollectionElement(
-                        name="sample2",
-                        type="paired",
-                        elements=[
-                            collections.HistoryDatasetElement(name="forward", id=dataset3_id),
-                            collections.HistoryDatasetElement(name="reverse", id=dataset4_id),
-                        ]
-                    ),
-                ]
-            )
-        )
-        self.assertEqual(collection_response["name"], "MyListOfPairedDatasets")
-        self.assertEqual(collection_response["collection_type"], "list:paired")
-        elements = collection_response["elements"]
-        self.assertEqual(len(elements), 2)
-        self.assertEqual(elements[0]["element_index"], 0)
-        created_pair1 = elements[0]["object"]
-        self.assertEqual(created_pair1["collection_type"], "paired")
-        self.assertEqual(len(created_pair1["elements"]), 2)
-        forward_element1 = created_pair1["elements"][0]
-        self.assertEqual(forward_element1["element_identifier"], "forward")
-        self.assertEqual(forward_element1["element_index"], 0)
-        forward_dataset1 = forward_element1["object"]
-        self.assertEqual(forward_dataset1["id"], dataset1_id)
-
-        self.assertEqual(elements[1]["element_index"], 1)
-        created_pair2 = elements[1]["object"]
-        self.assertEqual(created_pair2["collection_type"], "paired")
-        self.assertEqual(len(created_pair2["elements"]), 2)
-        reverse_element2 = created_pair2["elements"][1]
-        reverse_dataset2 = reverse_element2["object"]
-
-        self.assertEqual(reverse_element2["element_identifier"], "reverse")
-        self.assertEqual(reverse_element2["element_index"], 1)
-        self.assertEqual(reverse_dataset2["id"], dataset4_id)
-
-    def test_collections_in_history_index(self):
-        history_id = self.gi.histories.create_history(name="TestHistoryDSIndex")["id"]
-        history_dataset_collection = self._create_pair_in_history(history_id)
-        contents = self.gi.histories.show_history(history_id, contents=True)
-        self.assertEqual(len(contents), 3)
-        self.assertEqual(contents[2]["id"], history_dataset_collection["id"])
-        self.assertEqual(contents[2]["name"], "MyTestPair")
-        self.assertEqual(contents[2]["collection_type"], "paired")
-
-    def test_show_history_dataset_collection(self):
-        history_id = self.gi.histories.create_history(name="TestHistoryDSIndexShow")["id"]
-        history_dataset_collection = self._create_pair_in_history(history_id)
-        show_response = self.gi.histories.show_dataset_collection(history_id, history_dataset_collection["id"])
-        for key in ["collection_type", "elements", "name", "deleted", "visible"]:
-            self.assertIn(key, show_response)
-        self.assertFalse(show_response["deleted"])
-        self.assertTrue(show_response["visible"])
-
-    def test_delete_history_dataset_collection(self):
-        history_id = self.gi.histories.create_history(name="TestHistoryDSDelete")["id"]
-        history_dataset_collection = self._create_pair_in_history(history_id)
-        self.gi.histories.delete_dataset_collection(history_id, history_dataset_collection["id"])
-        show_response = self.gi.histories.show_dataset_collection(history_id, history_dataset_collection["id"])
-        self.assertTrue(show_response["deleted"])
-
-    def test_update_history_dataset_collection(self):
-        history_id = self.gi.histories.create_history(name="TestHistoryDSDelete")["id"]
-        history_dataset_collection = self._create_pair_in_history(history_id)
-        self.gi.histories.update_dataset_collection(history_id, history_dataset_collection["id"], visible=False)
-        show_response = self.gi.histories.show_dataset_collection(history_id, history_dataset_collection["id"])
-        self.assertFalse(show_response["visible"])
-
-    def _create_pair_in_history(self, history_id):
-        dataset1_id = self._test_dataset(history_id)
-        dataset2_id = self._test_dataset(history_id)
-        collection_response = self.gi.histories.create_dataset_collection(
-            history_id=history_id,
-            collection_description=collections.CollectionDescription(
-                name="MyTestPair",
-                type="paired",
-                elements=[
-                    collections.HistoryDatasetElement(name="forward", id=dataset1_id),
-                    collections.HistoryDatasetElement(name="reverse", id=dataset2_id),
-                ]
-            )
-        )
-        return collection_response