Mercurial > repos > shellac > guppy_basecaller
diff env/lib/python3.7/site-packages/cwltool/tests/test_parallel.py @ 5:9b1c78e6ba9c draft default tip
"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"
| author | shellac |
|---|---|
| date | Mon, 01 Jun 2020 08:59:25 -0400 |
| parents | 79f47841a781 |
| children |
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--- a/env/lib/python3.7/site-packages/cwltool/tests/test_parallel.py Thu May 14 16:47:39 2020 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,31 +0,0 @@ -import json - -from cwltool.context import RuntimeContext -from cwltool.executors import MultithreadedJobExecutor -from cwltool import load_tool - -from .util import get_data, get_windows_safe_factory, windows_needs_docker - - -@windows_needs_docker -def test_sequential_workflow(tmpdir): - test_file = "tests/wf/count-lines1-wf.cwl" - executor = MultithreadedJobExecutor() - runtime_context = RuntimeContext() - runtime_context.outdir = str(tmpdir) - runtime_context.select_resources = executor.select_resources - factory = get_windows_safe_factory( - executor=executor, runtime_context=runtime_context) - echo = factory.make(get_data(test_file)) - file_contents = {"class": "File", - "location": get_data("tests/wf/whale.txt")} - assert echo(file1=file_contents) == {"count_output": 16} - -@windows_needs_docker -def test_scattered_workflow(): - test_file = "tests/wf/scatter-wf4.cwl" - job_file = "tests/wf/scatter-job2.json" - factory = get_windows_safe_factory(executor=MultithreadedJobExecutor()) - echo = factory.make(get_data(test_file)) - with open(get_data(job_file)) as job: - assert echo(**json.load(job)) == {'out': ['foo one three', 'foo two four']}
