Mercurial > repos > shellac > guppy_basecaller
diff env/lib/python3.7/site-packages/cwltool/tests/test_pathmapper.py @ 5:9b1c78e6ba9c draft default tip
"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"
| author | shellac |
|---|---|
| date | Mon, 01 Jun 2020 08:59:25 -0400 |
| parents | 79f47841a781 |
| children |
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--- a/env/lib/python3.7/site-packages/cwltool/tests/test_pathmapper.py Thu May 14 16:47:39 2020 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,90 +0,0 @@ -import pytest - -from cwltool.pathmapper import PathMapper, normalizeFilesDirs - - -def test_subclass(): - class SubPathMapper(PathMapper): - def __init__(self, referenced_files, basedir, stagedir, new): - super(SubPathMapper, self).__init__(referenced_files, basedir, stagedir) - self.new = new - - pathmap = SubPathMapper([], '', '', 'new') - assert pathmap.new is not None, 'new' - -normalization_parameters = [ - ('strip trailing slashes', - {'class': 'Directory', - 'location': '/foo/bar/' - }, - {'class': 'Directory', - 'location': '/foo/bar', - 'basename': 'bar' - } - ), - ('file', - {'class': 'File', - 'location': 'file1.txt' - }, - {'class': 'File', - 'location': 'file1.txt', - 'basename': 'file1.txt', - 'nameext': '.txt', - 'nameroot': 'file1' - } - ), - ('file with local uri', - {'class': 'File', - 'location': 'file:///foo/file1.txt' - }, - {'class': 'File', - 'location': 'file:///foo/file1.txt', - 'basename': 'file1.txt', - 'nameext': '.txt', - 'nameroot': 'file1' - } - ), - ('file with http url', - {'class': 'File', - 'location': 'http://example.com/file1.txt' - }, - {'class': 'File', - 'location': 'http://example.com/file1.txt', - 'basename': 'file1.txt', - 'nameext': '.txt', - 'nameroot': 'file1' - } - ) -] - -@pytest.mark.parametrize('name,file_dir,expected', normalization_parameters) -def test_normalizeFilesDirs(name, file_dir, expected): - normalizeFilesDirs(file_dir) - assert file_dir == expected, name - -# (filename, expected: (nameroot, nameext)) -basename_generation_parameters = [ - ('foo.bar', ('foo', '.bar')), - ('foo', ('foo', '')), - ('.foo', ('.foo', '')), - ('foo.', ('foo', '.')), - ('foo.bar.baz', ('foo.bar', '.baz')) -] -@pytest.mark.parametrize('filename,expected', basename_generation_parameters) -def test_basename_field_generation(filename, expected): - nameroot, nameext = expected - expected = { - 'class': 'File', - 'location': '/foo/' + filename, - 'basename': filename, - 'nameroot': nameroot, - 'nameext': nameext - } - - file = { - 'class': 'File', - 'location': '/foo/' + filename - } - - normalizeFilesDirs(file) - assert file == expected
