Mercurial > repos > shellac > guppy_basecaller
diff env/lib/python3.7/site-packages/cwltool/tests/test_trs.py @ 5:9b1c78e6ba9c draft default tip
"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"
| author | shellac |
|---|---|
| date | Mon, 01 Jun 2020 08:59:25 -0400 |
| parents | 79f47841a781 |
| children |
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--- a/env/lib/python3.7/site-packages/cwltool/tests/test_trs.py Thu May 14 16:47:39 2020 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,76 +0,0 @@ -from __future__ import absolute_import - -import mock - -from cwltool.main import main -from .util import get_data - -def mocked_requests_head(*args): - - class MockResponse: - def __init__(self, json_data, status_code, raise_for_status=None): - self.json_data = json_data - self.status_code = status_code - self.raise_for_status = mock.Mock() - self.raise_for_status.side_effect = raise_for_status - - def json(self): - return self.json_data - - return MockResponse(None, 200) - - -def mocked_requests_get(*args): - - class MockResponse: - def __init__(self, json_data, status_code, raise_for_status=None): - self.json_data = json_data - self.text = json_data - self.status_code = status_code - self.raise_for_status = mock.Mock() - self.raise_for_status.side_effect = raise_for_status - - def json(self): - return self.json_data - - if args[0] == 'https://dockstore.org/api/api/ga4gh/v2/tools/quay.io%2Fbriandoconnor%2Fdockstore-tool-md5sum/versions/1.0.4/CWL/files': - return MockResponse( - [{"file_type": "CONTAINERFILE", "path": "Dockerfile"}, {"file_type": "PRIMARY_DESCRIPTOR", "path": "Dockstore.cwl"}, - {"file_type": "TEST_FILE", "path": "test.json"}], 200) - elif args[0] == 'https://dockstore.org/api/api/ga4gh/v2/tools/quay.io%2Fbriandoconnor%2Fdockstore-tool-md5sum/versions/1.0.4/plain-CWL/descriptor/Dockstore.cwl': - string = open(get_data("tests/trs/Dockstore.cwl"), "r").read() - return MockResponse(string, 200) - elif args[0] == 'https://dockstore.org/api/api/ga4gh/v2/tools/%23workflow%2Fgithub.com%2Fdockstore-testing%2Fmd5sum-checker/versions/develop/plain-CWL/descriptor/md5sum-tool.cwl': - string = open(get_data("tests/trs/md5sum-tool.cwl"), "r").read() - return MockResponse(string, 200) - elif args[0] == 'https://dockstore.org/api/api/ga4gh/v2/tools/%23workflow%2Fgithub.com%2Fdockstore-testing%2Fmd5sum-checker/versions/develop/plain-CWL/descriptor/md5sum-workflow.cwl': - string = open(get_data("tests/trs/md5sum-workflow.cwl"), "r").read() - return MockResponse(string, 200) - elif args[ - 0] == 'https://dockstore.org/api/api/ga4gh/v2/tools/%23workflow%2Fgithub.com%2Fdockstore-testing%2Fmd5sum-checker/versions/develop/CWL/files': - return MockResponse( - [{"file_type": "TEST_FILE", "path": "md5sum-input-cwl.json"}, {"file_type": "SECONDARY_DESCRIPTOR", "path": "md5sum-tool.cwl"}, - {"file_type": "PRIMARY_DESCRIPTOR", "path": "md5sum-workflow.cwl"}], 200) - - print ("A mocked call to TRS missed, target was %s", args[0]) - return MockResponse(None, 404) - - -@mock.patch('requests.Session.head', side_effect=mocked_requests_head) -@mock.patch('requests.Session.get', side_effect=mocked_requests_get) -def test_tool_trs_template(mock_head, mock_get): - params = ["--make-template", r"quay.io/briandoconnor/dockstore-tool-md5sum:1.0.4"] - return_value = main(params) - mock_head.assert_called() - mock_get.assert_called() - assert return_value == 0 - - -@mock.patch('requests.Session.head', side_effect=mocked_requests_head) -@mock.patch('requests.Session.get', side_effect=mocked_requests_get) -def test_workflow_trs_template(mock_head, mock_get): - params = ["--make-template", r"#workflow/github.com/dockstore-testing/md5sum-checker:develop"] - return_value = main(params) - mock_head.assert_called() - mock_get.assert_called() - assert return_value == 0