diff env/lib/python3.7/site-packages/cwltool/tests/test_udocker.py @ 5:9b1c78e6ba9c draft default tip

"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"

--- a/env/lib/python3.7/site-packages/cwltool/tests/test_udocker.py	Thu May 14 16:47:39 2020 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,78 +0,0 @@
-import pytest
-import sys
-import os
-import subprocess
-from .util import get_data, get_main_output
-import tempfile
-import shutil
-from psutil.tests import TRAVIS
-
-LINUX = sys.platform in ('linux', 'linux2')
-
-
-#@pytest.mark.skipif(not LINUX, reason="LINUX only")
[e-mail]("Udocker install is broken, see https://github.com/indigo-dc/udocker/issues/221")
-class TestUdocker:
-    udocker_path = None
-
-    @classmethod
-    def setup_class(cls):
-        test_cwd = os.getcwd()
-        test_environ = os.environ.copy()
-        cls.docker_install_dir = tempfile.mkdtemp()
-        os.chdir(cls.docker_install_dir)
-
-        url="https://download.ncg.ingrid.pt/webdav/udocker/udocker-1.1.3.tar.gz"
-        install_cmds = [
-            ["curl", url, "-o", "./udocker-tarball.tgz"],
-            ["tar", "xzvf", "udocker-tarball.tgz", "udocker"],
-            ["bash", "-c", "UDOCKER_TARBALL={}/udocker-tarball.tgz ./udocker install".format(cls.docker_install_dir)]]
-
-        os.environ['UDOCKER_DIR'] = os.path.join(cls.docker_install_dir, ".udocker")
-        os.environ['HOME'] = cls.docker_install_dir
-
-        results = []
-        for _ in range(3):
-              results = [subprocess.call(cmds) for cmds in install_cmds]
-              if sum(results) == 0:
-                  break
-              subprocess.call(["rm", "./udocker"])
-
-        assert sum(results) == 0
-
-        cls.udocker_path = os.path.join(cls.docker_install_dir, 'udocker')
-        os.chdir(test_cwd)
-        os.environ = test_environ
-        print('Udocker install dir: ' + cls.docker_install_dir)
-
-    @classmethod
-    def teardown_class(cls):
-        shutil.rmtree(cls.docker_install_dir)
-
-    def test_udocker_usage_should_not_write_cid_file(self, tmpdir):
-        cwd = tmpdir.chdir()
-
-        test_file = "tests/wf/wc-tool.cwl"
-        job_file = "tests/wf/wc-job.json"
-        error_code, stdout, stderr = get_main_output(
-            ["--debug", "--default-container", "debian", "--user-space-docker-cmd=" + self.udocker_path,
-             get_data(test_file), get_data(job_file)])
-        cwd.chdir()
-        cidfiles_count = sum(1 for _ in tmpdir.visit(fil="*.cid"))
-
-        tmpdir.remove(ignore_errors=True)
-
-        assert "completed success" in stderr, stderr
-        assert cidfiles_count == 0
-
-    @pytest.mark.skipif(TRAVIS, reason='Not reliable on single threaded test on travis.')
-    def test_udocker_should_display_memory_usage(self, tmpdir):
-        cwd = tmpdir.chdir()
-        error_code, stdout, stderr = get_main_output(
-            ["--enable-ext", "--default-container=debian",  "--user-space-docker-cmd=" + self.udocker_path,
-             get_data("tests/wf/timelimit.cwl"), "--sleep_time", "10"])
-        cwd.chdir()
-        tmpdir.remove(ignore_errors=True)
-
-        assert "completed success" in stderr, stderr
-        assert "Max memory" in stderr, stderr