diff env/lib/python3.7/site-packages/ephemeris/__init__.py @ 5:9b1c78e6ba9c draft default tip

"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"

--- a/env/lib/python3.7/site-packages/ephemeris/__init__.py	Thu May 14 16:47:39 2020 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,66 +0,0 @@
-
-# -*- coding: utf-8 -*-
-
-import yaml
-from bioblend import galaxy
-
-__version__ = '0.10.5'
-
-PROJECT_NAME = "ephemeris"
-PROJECT_OWNER = PROJECT_USERAME = "galaxyproject"
-PROJECT_URL = "https://github.com/galaxyproject/ephemeris"
-PROJECT_AUTHOR = 'Galaxy Project and Community'
-PROJECT_EMAIL = '[e-mail]'
-RAW_CONTENT_URL = "https://raw.github.com/%s/%s/master/" % (
-    PROJECT_USERAME, PROJECT_NAME
-)
-
-
-def check_url(url, log=None):
-    if not url.startswith('http'):
-        if log:
-            log.warning('URL should start with http:// or https://. https:// chosen by default.')
-        url = 'https://' + url
-    return url
-
-
-def get_galaxy_connection(args, file=None, log=None, login_required=True):
-    """
-    Return a Galaxy connection, given a user or an API key.
-    If not given gets the arguments from the file.
-    If either is missing raise ValueError.
-    """
-    if file:
-        file_content = load_yaml_file(file)
-    else:
-        file_content = dict()
-
-    url = args.galaxy or file_content.get('galaxy_instance')
-    galaxy_url = check_url(url, log)
-    api_key = args.api_key or file_content.get('api_key')
-
-    if args.user and args.password:
-        return galaxy.GalaxyInstance(url=galaxy_url, email=args.user, password=args.password)
-    elif api_key:
-        return galaxy.GalaxyInstance(url=galaxy_url, key=api_key)
-    elif not login_required:
-        return galaxy.GalaxyInstance(url=galaxy_url)
-    else:
-        raise ValueError("Missing api key or user & password combination, in order to make a galaxy connection.")
-
-
-def load_yaml_file(filename):
-    """
-    Load YAML from the `tool_list_file` and return a dict with the content.
-    """
-    with open(filename, 'r') as f:
-        dictionary = yaml.safe_load(f)
-    return dictionary
-
-
-def dump_to_yaml_file(content, file_name):
-    """
-    Dump YAML-compatible `content` to `file_name`.
-    """
-    with open(file_name, 'w') as f:
-        yaml.dump(content, f, default_flow_style=False)