Mercurial > repos > shellac > guppy_basecaller
diff env/lib/python3.7/site-packages/galaxy/util/ucsc.py @ 5:9b1c78e6ba9c draft default tip
"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"
| author | shellac |
|---|---|
| date | Mon, 01 Jun 2020 08:59:25 -0400 |
| parents | 79f47841a781 |
| children |
line wrap: on
line diff
--- a/env/lib/python3.7/site-packages/galaxy/util/ucsc.py Thu May 14 16:47:39 2020 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,39 +0,0 @@ -""" -Utilities for dealing with UCSC data. -""" - - -class UCSCLimitException(Exception): - pass - - -class UCSCOutWrapper(object): - """File-like object that throws an exception if it encounters the UCSC limit error lines""" - - def __init__(self, other): - self.other = iter(other) - # Need one line of lookahead to be sure we are hitting the limit message - self.lookahead = None - - def __iter__(self): - return self - - def __next__(self): - if self.lookahead is None: - line = next(self.other) - else: - line = self.lookahead - self.lookahead = None - if line.startswith("----------"): - next_line = next(self.other) - if next_line.startswith("Reached output limit"): - raise UCSCLimitException(next_line.strip()) - else: - self.lookahead = next_line - return line - - def next(self): - return self.__next__() - - def readline(self): - return self.next()
