diff env/lib/python3.7/site-packages/gxformat2/main.py @ 5:9b1c78e6ba9c draft default tip

"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"

--- a/env/lib/python3.7/site-packages/gxformat2/main.py	Thu May 14 16:47:39 2020 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,61 +0,0 @@
-"""Module containing :func:`convert_and_import_workflow`."""
-import os
-
-from ._yaml import ordered_load
-from .converter import python_to_workflow, yaml_to_workflow
-from .interface import BioBlendImporterGalaxyInterface
-
-
-def convert_and_import_workflow(has_workflow, **kwds):
-    """Conversion and import Format 2 workflows into a target Galaxy instance."""
-    galaxy_interface = kwds.get("galaxy_interface", None)
-    if galaxy_interface is None:
-        galaxy_interface = BioBlendImporterGalaxyInterface(**kwds)
-
-    source_type = kwds.get("source_type", None)
-    workflow_directory = kwds.get("workflow_directory", None)
-    if source_type == "path":
-        workflow_path = has_workflow
-        if workflow_directory is None:
-            workflow_directory = os.path.dirname(has_workflow)
-        with open(workflow_path, "r") as f:
-            has_workflow = ordered_load(f)
-
-    if workflow_directory is not None:
-        workflow_directory = os.path.abspath(workflow_directory)
-
-    convert = kwds.get("convert", True)
-    raw_yaml = kwds.get("raw_yaml", False)
-    if raw_yaml and convert:
-        raise Exception("Incompatible options selected.")
-    if convert:
-        if isinstance(has_workflow, dict):
-            workflow = python_to_workflow(has_workflow, galaxy_interface, workflow_directory)
-        else:
-            workflow = yaml_to_workflow(has_workflow, galaxy_interface, workflow_directory)
-    else:
-        workflow = has_workflow
-        if not isinstance(workflow, dict) and not raw_yaml:
-            workflow = ordered_load(workflow)
-        else:
-            workflow = {"yaml_content": workflow}
-
-    name = kwds.get("name", None)
-    if name is not None:
-        workflow["name"] = name
-    publish = kwds.get("publish", False)
-    exact_tools = kwds.get("exact_tools", False)
-    fill_defaults = kwds.get("fill_defaults", True)
-    import_kwds = {
-        "fill_defaults": fill_defaults
-    }
-    if publish:
-        import_kwds["publish"] = True
-    if exact_tools:
-        import_kwds["exact_tools"] = True
-    return galaxy_interface.import_workflow(workflow, **import_kwds)
-
-
-__all__ = (
-    'convert_and_import_workflow',
-)