Mercurial > repos > shellac > guppy_basecaller
diff env/lib/python3.7/site-packages/planemo/commands/cmd_mull.py @ 5:9b1c78e6ba9c draft default tip
"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"
| author | shellac |
|---|---|
| date | Mon, 01 Jun 2020 08:59:25 -0400 |
| parents | 79f47841a781 |
| children |
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--- a/env/lib/python3.7/site-packages/planemo/commands/cmd_mull.py Thu May 14 16:47:39 2020 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,32 +0,0 @@ -"""Module describing the planemo ``mull`` command.""" -import click -from galaxy.tool_util.deps.mulled.mulled_build import mull_targets - -from planemo import options -from planemo.cli import command_function -from planemo.mulled import build_mull_target_kwds, collect_mulled_target_lists - - -@click.command('mull') -@options.optional_tools_arg(multiple=True) -@options.recursive_option() -@options.mulled_options() -@options.conda_ensure_channels_option() -@command_function -def cli(ctx, paths, **kwds): - """Build containers for specified tools. - - Supplied tools will be inspected for referenced requirement packages. For - each combination of requirements a "mulled" container will be built. Galaxy - can automatically discover this container and subsequently use it to run - or test the tool. - - For this to work, the tool's requirements will need to be present in a known - Conda channel such as bioconda (https://github.com/bioconda/bioconda-recipes). - This can be verified by running ``planemo lint --conda_requirements`` on the - target tool(s). - """ - for mulled_targets in collect_mulled_target_lists(ctx, paths, recursive=kwds["recursive"]): - mull_target_kwds = build_mull_target_kwds(ctx, **kwds) - command = kwds["mulled_command"] - mull_targets(mulled_targets, command=command, **mull_target_kwds)