Mercurial > repos > shellac > guppy_basecaller
diff env/lib/python3.7/site-packages/planemo/commands/cmd_serve.py @ 5:9b1c78e6ba9c draft default tip
"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"
| author | shellac |
|---|---|
| date | Mon, 01 Jun 2020 08:59:25 -0400 |
| parents | 79f47841a781 |
| children |
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--- a/env/lib/python3.7/site-packages/planemo/commands/cmd_serve.py Thu May 14 16:47:39 2020 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,43 +0,0 @@ -"""Module describing the planemo ``serve`` command.""" -import click - -from planemo import options -from planemo.cli import command_function -from planemo.galaxy import galaxy_serve -from planemo.runnable import for_paths -from planemo.tools import uris_to_paths - - -@click.command('serve') -@options.optional_tools_arg(multiple=True, allow_uris=True) -@options.galaxy_serve_options() -@options.enable_cwl_option() -@options.galaxy_cwl_root_option() -@command_function -def cli(ctx, uris, **kwds): - """Launch Galaxy instance with specified tools. - - The Galaxy tool panel will include just the referenced tool or tools (by - default all the tools in the current working directory) and the upload - tool. - - planemo will search parent directories to see if any is a Galaxy instance - - but one can pick the Galaxy instance to use with the ``--galaxy_root`` - option or force planemo to download a disposable instance with the - ``--install_galaxy`` flag. - - ``planemo`` will run the Galaxy instance in an existing virtualenv if one - exists in a ``.venv`` directory in the specified ``--galaxy_root``. - Otherwise, the Galaxy instance will run in a clean virtualenv created in - ``/tmp``. - - ``planemo`` uses temporarily generated config files and environment - variables to attempt to shield this execution of Galaxy from manually - launched runs against that same Galaxy root - but this may not be bullet - proof yet, so please be careful and do not try this against a production - Galaxy instance. - """ - paths = uris_to_paths(ctx, uris) - runnables = for_paths(paths) - kwds['galaxy_skip_client_build'] = False - galaxy_serve(ctx, runnables, **kwds)