diff env/lib/python3.7/site-packages/planemo/conda_recipes.py @ 5:9b1c78e6ba9c draft default tip

"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"

--- a/env/lib/python3.7/site-packages/planemo/conda_recipes.py	Thu May 14 16:47:39 2020 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,63 +0,0 @@
-"""Planemo specific utilities for dealing with conda recipe generation.
-"""
-
-from __future__ import absolute_import
-
-import os
-
-from planemo import git
-from planemo.bioconda_scripts import bioconductor_skeleton
-from planemo.io import info
-
-# Bioconda helper functions
-
-
-def clone_bioconda_repo(path):
-    """Clone bioconda repository in given path."""
-    bioconda_repo = "[e-mail]:bioconda/bioconda-recipes.git"
-    git.clone(None, bioconda_repo, path)
-    return "git clone of bioconda repo worked"
-
-
-def write_bioconda_recipe(package_name, clone, update, bioconda_dir_path=None):
-    """Make a bioconda recipe given the package name.
-
-    clone: y/N , clone the whole bioconda repository and create recipe inside
-    repository.
-
-    update: The update feature differs from the one in bioconda, as it
-    updates the specific package, as opposed to the every package in the
-    biocoda repository.
-    """
-    # set bioconda path
-    if bioconda_dir_path is None:
-        bioconda_recipe_path = os.path.join(os.path.expanduser("~"), "bioconda-recipes")
-    else:
-        bioconda_recipe_path = os.path.join(bioconda_dir_path, "bioconda-recipes")
-
-    # Clone
-    if clone and (not os.path.exists(bioconda_recipe_path)):
-        clone_bioconda_repo(bioconda_recipe_path)
-        info("bioconda-recipes cloned and writing to %s" % bioconda_dir_path)
-    else:
-        info("Bioconda repository not cloned or already exists")
-
-    # Check if package_name is in recipes
-    presence = any(package_name in r for r, d, f in os.walk(bioconda_recipe_path))
-    if presence:
-        info("Package already exists in bioconda")
-        if update:
-            info("Package will be updated")
-            recipe_dir = os.path.join(bioconda_recipe_path, "recipes")
-            bioconductor_skeleton.write_recipe(package_name, recipe_dir, True)
-    elif not presence:
-        info("Package found in bioconda recipes")
-        recipe_dir = os.path.join(bioconda_recipe_path, "recipes")
-        bioconductor_skeleton.write_recipe(package_name, recipe_dir, True)
-    return
-
-
-__all__ = (
-    "clone_bioconda_repo",
-    "write_bioconda_recipe",
-)