diff env/lib/python3.7/site-packages/planemo/galaxy/ephemeris_sleep.py @ 5:9b1c78e6ba9c draft default tip

"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"

--- a/env/lib/python3.7/site-packages/planemo/galaxy/ephemeris_sleep.py	Thu May 14 16:47:39 2020 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,85 +0,0 @@
-#!/usr/bin/env python
-'''Utility to do a blocking sleep until a Galaxy instance is responsive.
-This is useful in docker images, in RUN steps, where one needs to wait
-for a currently starting Galaxy to be alive, before API requests can be
-made successfully.
-The script functions by making repeated requests to
-``http(s)://fqdn/api/version``, an API which requires no authentication
-to access.'''
-
-import sys
-import time
-from argparse import ArgumentParser
-
-import requests
-from galaxy.util import unicodify
-
-try:
-    from .common_parser import get_common_args
-except ImportError:
-    # This won't stay in Planemo long, main no longer functional.
-    get_common_args = None
-
-
-def _parser():
-    '''Constructs the parser object'''
-    parent = get_common_args(login_required=False)
-    parser = ArgumentParser(parents=[parent], usage="usage: python %(prog)s <options>",
-                            description="Script to sleep and wait for Galaxy to be alive.")
-    parser.add_argument("--timeout",
-                        default=0, type=int,
-                        help="Galaxy startup timeout in seconds. The default value of 0 waits forever")
-    return parser
-
-
-def _parse_cli_options():
-    """
-    Parse command line options, returning `parse_args` from `ArgumentParser`.
-    """
-    parser = _parser()
-    return parser.parse_args()
-
-
-def sleep(galaxy_url, verbose=False, timeout=0):
-    count = 0
-    while True:
-        try:
-            result = requests.get(galaxy_url + '/api/version')
-            try:
-                result = result.json()
-                if verbose:
-                    sys.stdout.write("Galaxy Version: %s\n" % result['version_major'])
-                break
-            except ValueError:
-                if verbose:
-                    sys.stdout.write("[%02d] No valid json returned... %s\n" % (count, result.__str__()))
-                    sys.stdout.flush()
-        except requests.exceptions.ConnectionError as e:
-            if verbose:
-                sys.stdout.write("[%02d] Galaxy not up yet... %s\n" % (count, unicodify(e)[:100]))
-                sys.stdout.flush()
-        count += 1
-
-        # If we cannot talk to galaxy and are over the timeout
-        if timeout != 0 and count > timeout:
-            sys.stderr.write("Failed to contact Galaxy\n")
-            return False
-
-        time.sleep(1)
-
-    return True
-
-
-def main():
-    """
-    Main function
-    """
-    options = _parse_cli_options()
-
-    galaxy_alive = sleep(galaxy_url=options.galaxy, verbose=options.verbose, timeout=options.timeout)
-    exit_code = 0 if galaxy_alive else 1
-    sys.exit(exit_code)
-
-
-if __name__ == "__main__":
-    main()