Mercurial > repos > shellac > guppy_basecaller
diff env/lib/python3.7/site-packages/planemo/linters/xsd.py @ 5:9b1c78e6ba9c draft default tip
"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"
| author | shellac |
|---|---|
| date | Mon, 01 Jun 2020 08:59:25 -0400 |
| parents | 79f47841a781 |
| children |
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--- a/env/lib/python3.7/site-packages/planemo/linters/xsd.py Thu May 14 16:47:39 2020 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,28 +0,0 @@ -"""Tool linting module that lints Galaxy tool against experimental XSD.""" -import copy -import os -import tempfile - -import galaxy.tool_util - -import planemo.lint - -TOOL_XSD = os.path.join(os.path.dirname(galaxy.tool_util.__file__), 'xsd', "galaxy.xsd") - - -def lint_tool_xsd(tool_xml, lint_ctx): - """Write a temp file out and lint it.""" - with tempfile.NamedTemporaryFile() as tf: - _clean_root(tool_xml).write(tf.name) - planemo.lint.lint_xsd(lint_ctx, TOOL_XSD, tf.name) - - -def _clean_root(tool_xml): - """XSD assumes macros have been expanded, so remove them.""" - clean_tool_xml = copy.deepcopy(tool_xml) - to_remove = [] - for macros_el in clean_tool_xml.getroot().findall("macros"): - to_remove.append(macros_el) - for macros_el in to_remove: - clean_tool_xml.getroot().remove(macros_el) - return clean_tool_xml
