Mercurial > repos > shellac > sam_consensus_v3
annotate env/lib/python3.9/site-packages/cwltool/tests/secondary-files.cwl @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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1 #!/usr/bin/env cwl-runner |
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2 |
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3 cwlVersion: v1.1.0-dev1 |
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4 |
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5 requirements: |
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6 - class: InlineJavascriptRequirement |
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7 - class: ShellCommandRequirement |
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8 |
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9 class: CommandLineTool |
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10 |
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11 inputs: |
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12 fasta_path: |
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13 type: File |
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14 secondaryFiles: |
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15 - pattern: ^.fastq |
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16 required: true |
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17 - pattern: .crai |
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18 required: false |
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19 - .bai? |
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20 - pattern: "${ return null }" |
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21 |
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22 outputs: |
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23 bai_list: |
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24 type: File |
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25 outputBinding: |
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26 glob: lsout |
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27 secondaryFiles: |
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28 - .bai? |
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29 - pattern: "${ return null }" |
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30 - pattern: .crai |
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31 required: false |
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32 - pattern: .idx |
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33 |
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34 baseCommand: ["ls"] |
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35 |
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36 stdout: lsout |