Mercurial > repos > shellac > sam_consensus_v3
annotate env/lib/python3.9/site-packages/cwltool/tests/test_fetch.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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1 import os |
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2 from pathlib import Path |
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3 from typing import Any, List, Optional |
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4 from urllib.parse import urljoin, urlsplit |
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5 |
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6 import pytest |
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7 import requests |
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8 from schema_salad.fetcher import Fetcher |
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9 from schema_salad.utils import CacheType |
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10 |
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11 from cwltool.context import LoadingContext |
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12 from cwltool.load_tool import load_tool |
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13 from cwltool.main import main |
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14 from cwltool.resolver import resolve_local |
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15 from cwltool.utils import onWindows |
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16 from cwltool.workflow import default_make_tool |
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17 |
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18 from .util import get_data, working_directory |
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19 |
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20 |
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21 class CWLTestFetcher(Fetcher): |
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22 def __init__( |
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23 self, |
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24 cache: CacheType, |
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25 session: Optional[requests.sessions.Session], |
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26 ) -> None: |
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27 """Create a Fetcher that provides a fixed result for testing purposes.""" |
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28 |
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29 def fetch_text(self, url: str, content_types: Optional[List[str]] = None) -> str: |
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30 if url == "baz:bar/foo.cwl": |
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31 return """ |
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32 cwlVersion: v1.0 |
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33 class: CommandLineTool |
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34 baseCommand: echo |
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35 inputs: [] |
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36 outputs: [] |
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37 """ |
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38 raise RuntimeError("Not foo.cwl, was %s" % url) |
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39 |
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40 def check_exists(self, url): # type: (str) -> bool |
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41 return url == "baz:bar/foo.cwl" |
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42 |
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43 def urljoin(self, base: str, url: str) -> str: |
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44 urlsp = urlsplit(url) |
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45 if urlsp.scheme: |
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46 return url |
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47 basesp = urlsplit(base) |
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48 |
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49 if basesp.scheme == "keep": |
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50 return base + "/" + url |
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51 return urljoin(base, url) |
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52 |
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53 |
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54 def test_fetcher() -> None: |
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55 def test_resolver(d: Any, a: str) -> str: |
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56 if a.startswith("baz:bar/"): |
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57 return a |
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58 return "baz:bar/" + a |
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59 |
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60 loadingContext = LoadingContext( |
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61 { |
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62 "construct_tool_object": default_make_tool, |
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63 "resolver": test_resolver, |
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64 "fetcher_constructor": CWLTestFetcher, |
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65 } |
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66 ) |
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67 |
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68 load_tool("foo.cwl", loadingContext) |
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69 |
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70 assert ( |
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71 main(["--print-pre", "--debug", "foo.cwl"], loadingContext=loadingContext) == 0 |
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72 ) |
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73 |
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74 |
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75 root = Path(os.path.join(get_data(""))) |
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76 |
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77 path_fragments = [ |
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78 (os.path.join("tests", "echo.cwl"), "/tests/echo.cwl"), |
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79 (os.path.join("tests", "echo.cwl") + "#main", "/tests/echo.cwl#main"), |
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80 (str(root / "tests" / "echo.cwl"), "/tests/echo.cwl"), |
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81 (str(root / "tests" / "echo.cwl") + "#main", "/tests/echo.cwl#main"), |
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82 ] |
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83 |
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84 |
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85 def norm(uri: str) -> str: |
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86 if onWindows(): |
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87 return uri.lower() |
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88 return uri |
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89 |
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90 |
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91 @pytest.mark.parametrize("path,expected_path", path_fragments) |
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92 def test_resolve_local(path: str, expected_path: str) -> None: |
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93 with working_directory(root): |
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94 expected = norm(root.as_uri() + expected_path) |
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95 resolved = resolve_local(None, path) |
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96 assert resolved |
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97 assert norm(resolved) == expected |