Mercurial > repos > shellac > sam_consensus_v3
annotate env/lib/python3.9/site-packages/cwltool/tests/test_http_input.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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1 import os |
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2 from pathlib import Path |
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3 from typing import List |
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4 |
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5 from cwltool.pathmapper import PathMapper |
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6 from cwltool.utils import CWLObjectType |
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7 |
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8 |
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9 def test_http_path_mapping(tmp_path: Path) -> None: |
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10 |
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11 input_file_path = "https://raw.githubusercontent.com/common-workflow-language/cwltool/main/tests/2.fasta" |
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12 base_file: List[CWLObjectType] = [ |
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13 { |
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14 "class": "File", |
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15 "location": "https://raw.githubusercontent.com/common-workflow-language/cwltool/main/tests/2.fasta", |
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16 "basename": "chr20.fa", |
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17 } |
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18 ] |
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19 pathmap = PathMapper(base_file, os.getcwd(), str(tmp_path))._pathmap |
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20 |
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21 assert input_file_path in pathmap |
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22 assert os.path.exists(pathmap[input_file_path].resolved) |
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23 |
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24 with open(pathmap[input_file_path].resolved) as file: |
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25 contents = file.read() |
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26 |
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27 assert ">Sequence 561 BP; 135 A; 106 C; 98 G; 222 T; 0 other;" in contents |