Mercurial > repos > shellac > sam_consensus_v3
annotate env/lib/python3.9/site-packages/cwltool/tests/test_trs.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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1 from typing import Any, Optional |
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2 from unittest import mock |
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3 from unittest.mock import MagicMock |
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4 |
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5 from cwltool.main import main |
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6 |
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7 from .util import get_data |
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8 |
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9 |
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10 class MockResponse1: |
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11 def __init__( |
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12 self, json_data: Any, status_code: int, raise_for_status: Optional[bool] = None |
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13 ) -> None: |
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14 """Create a fake return object for requests.Session.head.""" |
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15 self.json_data = json_data |
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16 self.status_code = status_code |
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17 self.raise_for_status = mock.Mock() |
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18 self.raise_for_status.side_effect = raise_for_status |
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19 |
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20 def json(self) -> Any: |
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21 return self.json_data |
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22 |
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23 |
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24 def mocked_requests_head(*args: Any) -> MockResponse1: |
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25 |
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26 return MockResponse1(None, 200) |
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27 |
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28 |
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29 class MockResponse2: |
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30 def __init__( |
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31 self, json_data: Any, status_code: int, raise_for_status: Optional[bool] = None |
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32 ) -> None: |
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33 """Create a fake return object for requests.Session.get.""" |
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34 self.json_data = json_data |
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35 self.text = json_data |
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36 self.status_code = status_code |
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37 self.raise_for_status = mock.Mock() |
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38 self.raise_for_status.side_effect = raise_for_status |
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39 |
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40 def json(self) -> Any: |
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41 return self.json_data |
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42 |
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43 headers = {"content-type": "text/plain"} |
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44 |
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45 |
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46 def mocked_requests_get(*args: Any, **kwargs: Any) -> MockResponse2: |
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47 if ( |
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48 args[0] |
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49 == "https://dockstore.org/api/api/ga4gh/v2/tools/quay.io%2Fbriandoconnor%2Fdockstore-tool-md5sum/versions/1.0.4/CWL/files" |
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50 ): |
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51 return MockResponse2( |
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52 [ |
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53 {"file_type": "CONTAINERFILE", "path": "Dockerfile"}, |
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54 {"file_type": "PRIMARY_DESCRIPTOR", "path": "Dockstore.cwl"}, |
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55 {"file_type": "TEST_FILE", "path": "test.json"}, |
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56 ], |
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57 200, |
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58 ) |
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59 elif ( |
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60 args[0] |
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61 == "https://dockstore.org/api/api/ga4gh/v2/tools/quay.io%2Fbriandoconnor%2Fdockstore-tool-md5sum/versions/1.0.4/plain-CWL/descriptor/Dockstore.cwl" |
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62 ): |
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63 string = open(get_data("tests/trs/Dockstore.cwl")).read() |
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64 return MockResponse2(string, 200) |
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65 elif ( |
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66 args[0] |
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67 == "https://dockstore.org/api/api/ga4gh/v2/tools/%23workflow%2Fgithub.com%2Fdockstore-testing%2Fmd5sum-checker/versions/develop/plain-CWL/descriptor/md5sum-tool.cwl" |
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68 ): |
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69 string = open(get_data("tests/trs/md5sum-tool.cwl")).read() |
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70 return MockResponse2(string, 200) |
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71 elif ( |
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72 args[0] |
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73 == "https://dockstore.org/api/api/ga4gh/v2/tools/%23workflow%2Fgithub.com%2Fdockstore-testing%2Fmd5sum-checker/versions/develop/plain-CWL/descriptor/md5sum-workflow.cwl" |
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74 ): |
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75 string = open(get_data("tests/trs/md5sum-workflow.cwl")).read() |
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76 return MockResponse2(string, 200) |
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77 elif ( |
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78 args[0] |
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79 == "https://dockstore.org/api/api/ga4gh/v2/tools/%23workflow%2Fgithub.com%2Fdockstore-testing%2Fmd5sum-checker/versions/develop/CWL/files" |
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80 ): |
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81 return MockResponse2( |
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82 [ |
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83 {"file_type": "TEST_FILE", "path": "md5sum-input-cwl.json"}, |
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84 {"file_type": "SECONDARY_DESCRIPTOR", "path": "md5sum-tool.cwl"}, |
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85 {"file_type": "PRIMARY_DESCRIPTOR", "path": "md5sum-workflow.cwl"}, |
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86 ], |
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87 200, |
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88 ) |
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89 |
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90 print("A mocked call to TRS missed, target was %s", args[0]) |
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91 return MockResponse2(None, 404) |
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92 |
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93 |
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94 @mock.patch("requests.Session.head", side_effect=mocked_requests_head) |
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95 @mock.patch("requests.Session.get", side_effect=mocked_requests_get) |
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96 def test_tool_trs_template(mock_head: MagicMock, mock_get: MagicMock) -> None: |
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97 params = ["--make-template", r"quay.io/briandoconnor/dockstore-tool-md5sum:1.0.4"] |
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98 return_value = main(params) |
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99 mock_head.assert_called() |
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100 mock_get.assert_called() |
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101 assert return_value == 0 |
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102 |
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103 |
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104 @mock.patch("requests.Session.head", side_effect=mocked_requests_head) |
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105 @mock.patch("requests.Session.get", side_effect=mocked_requests_get) |
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106 def test_workflow_trs_template(mock_head: MagicMock, mock_get: MagicMock) -> None: |
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107 params = [ |
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108 "--make-template", |
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109 r"#workflow/github.com/dockstore-testing/md5sum-checker:develop", |
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110 ] |
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111 return_value = main(params) |
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112 mock_head.assert_called() |
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113 mock_get.assert_called() |
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114 assert return_value == 0 |