Mercurial > repos > shellac > sam_consensus_v3
annotate env/lib/python3.9/site-packages/bioblend/galaxy/tools/inputs.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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1 class InputsBuilder: |
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2 """ |
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3 """ |
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4 |
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5 def __init__(self): |
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6 self._input_dict = {} |
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7 |
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8 def set(self, name, input): |
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9 self._input_dict[name] = input |
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10 return self |
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11 |
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12 def set_param(self, name, value): |
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13 return self.set(name, param(value=value)) |
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14 |
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15 def set_dataset_param(self, name, value, src="hda"): |
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16 return self.set(name, dataset(value, src=src)) |
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17 |
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18 def to_dict(self): |
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19 values = {} |
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20 for key, value in self.flat_iter(): |
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21 if hasattr(value, "value"): |
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22 value = value.value |
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23 values[key] = value |
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24 return values |
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25 |
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26 def flat_iter(self, prefix=None): |
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27 for key, value in self._input_dict.items(): |
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28 effective_key = key if prefix is None else f"{prefix}|{key}" |
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29 if hasattr(value, "flat_iter"): |
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30 yield from value.flat_iter(effective_key) |
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31 else: |
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32 yield effective_key, value |
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33 |
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34 |
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35 class RepeatBuilder: |
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36 |
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37 def __init__(self): |
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38 self._instances = [] |
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39 |
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40 def instance(self, inputs): |
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41 self._instances.append(inputs) |
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42 return self |
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43 |
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44 def flat_iter(self, prefix=None): |
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45 for index, instance in enumerate(self._instances): |
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46 index_prefix = "%s_%d" % (prefix, index) |
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47 yield from instance.flat_iter(index_prefix) |
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48 |
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49 |
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50 class Param: |
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51 |
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52 def __init__(self, value): |
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53 self.value = value |
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54 |
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55 |
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56 class DatasetParam(Param): |
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57 |
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58 def __init__(self, value, src="hda"): |
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59 if not isinstance(value, dict): |
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60 value = dict(src=src, id=value) |
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61 super().__init__(value) |
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62 |
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63 |
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64 inputs = InputsBuilder |
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65 repeat = RepeatBuilder |
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66 conditional = InputsBuilder |
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67 param = Param |
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68 dataset = DatasetParam |
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69 |
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70 __all__ = ("inputs", "repeat", "conditional", "param") |